Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G043600.1 | Wheat | nucleus | 83.66 | 93.99 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 80.28 | 92.53 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 79.15 | 89.78 |
| EES06150 | Sorghum | nucleus | 63.94 | 75.92 |
| Zm00001d014989_P001 | Maize | nucleus | 61.69 | 71.1 |
| Solyc01g009650.1.1 | Tomato | nucleus | 16.62 | 64.84 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 37.46 | 46.34 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 33.52 | 42.96 |
| Bra013900.1-P | Field mustard | nucleus | 25.63 | 42.33 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 33.24 | 41.7 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 32.39 | 41.52 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 31.27 | 40.66 |
| KRH35334 | Soybean | nucleus | 29.58 | 38.89 |
| PGSC0003DMT400037080 | Potato | nucleus | 30.14 | 38.49 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 30.7 | 36.58 |
| Solyc03g025870.2.1 | Tomato | nucleus | 28.73 | 36.56 |
| KRH38485 | Soybean | nucleus | 29.3 | 35.74 |
| KRH09018 | Soybean | nucleus | 29.3 | 35.74 |
| CDY38910 | Canola | nucleus | 26.48 | 35.21 |
| Bra029129.1-P | Field mustard | nucleus | 26.48 | 35.21 |
| CDY32589 | Canola | nucleus | 24.79 | 35.06 |
| CDY50197 | Canola | nucleus | 24.51 | 34.8 |
| CDY64708 | Canola | nucleus | 24.79 | 34.11 |
| AT3G48920.1 | Thale cress | nucleus | 25.07 | 34.1 |
| CDX89413 | Canola | nucleus | 25.92 | 34.07 |
| AT5G52260.1 | Thale cress | nucleus | 25.63 | 33.96 |
| Bra018027.1-P | Field mustard | nucleus | 24.51 | 33.72 |
| CDY05881 | Canola | nucleus | 24.51 | 33.72 |
| CDX94440 | Canola | nucleus | 24.23 | 33.46 |
| CDX92718 | Canola | nucleus | 23.66 | 32.06 |
| AT4G25560.1 | Thale cress | nucleus | 25.35 | 31.8 |
| KRG91494 | Soybean | nucleus | 29.58 | 31.53 |
| TraesCS4A01G411900.1 | Wheat | nucleus | 21.69 | 30.43 |
| TraesCS1A01G366100.1 | Wheat | nucleus | 24.51 | 29.79 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 23.94 | 29.01 |
| TraesCS1A01G365900.1 | Wheat | nucleus | 24.23 | 28.96 |
| TraesCS2A01G152900.1 | Wheat | nucleus | 19.44 | 28.87 |
| TraesCS1A01G366200.1 | Wheat | nucleus | 23.66 | 28.38 |
| TraesCS3A01G254500.1 | Wheat | nucleus | 24.79 | 27.85 |
| TraesCS3A01G094300.1 | Wheat | nucleus | 21.69 | 27.7 |
| TraesCS1A01G366300.1 | Wheat | nucleus | 22.25 | 27.34 |
| TraesCS3A01G200300.1 | Wheat | nucleus | 23.1 | 27.15 |
| TraesCS1A01G366000.1 | Wheat | nucleus | 21.13 | 26.79 |
| TraesCS7A01G333200.1 | Wheat | nucleus | 17.18 | 24.5 |
| TraesCS7A01G304500.1 | Wheat | nucleus | 23.66 | 24.49 |
| TraesCS2A01G152700.1 | Wheat | nucleus | 24.79 | 24.24 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 25.35 | 23.75 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 26.76 | 22.09 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 23.1 | 21.08 |
| Bra019154.1-P | Field mustard | nucleus | 25.35 | 19.52 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G037700.1 | EnsemblPlantsGene:TraesCS6A01G037700 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF925 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:18702339..18704117
Molecular Weight (calculated)
38083.4 Da
IEP (calculated)
7.826
GRAVY (calculated)
-0.568
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGGRSPSA ATTSAAATAH ILVLWDRRGG ESLGGISEEG EGRRHRSMGC RSCDKPKMNY RKGLWSPEED QRLRDYILKH GLGCWSAVPA KAGLQRNGKS
101: CRLRWINYLR PGLKRGMFSQ EEEDVVINLQ AKLGNKWSQI AMHLPGRTDN EVKNYWNSYL KKRVMQLGSN SSSNPASKNA SPELLTSMSA TTELIMTSGG
201: GGGGGSTATS THDHDANISS SGAISAAEPF VDQHEHQHHH QQQAKNFVFA DWMPTAAVTP AGPESYSMSA HWPASTASSG NVTPSHGAFV GDQMSGSSYA
301: ALQHPHQHHH HQSAVTVAGA HASAGGMVAG GGYFDLLNMG DIYGGFSTTN DDLLF
101: CRLRWINYLR PGLKRGMFSQ EEEDVVINLQ AKLGNKWSQI AMHLPGRTDN EVKNYWNSYL KKRVMQLGSN SSSNPASKNA SPELLTSMSA TTELIMTSGG
201: GGGGGSTATS THDHDANISS SGAISAAEPF VDQHEHQHHH QQQAKNFVFA DWMPTAAVTP AGPESYSMSA HWPASTASSG NVTPSHGAFV GDQMSGSSYA
301: ALQHPHQHHH HQSAVTVAGA HASAGGMVAG GGYFDLLNMG DIYGGFSTTN DDLLF
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EVGKETNRSD NNNSTSFSSE TNQDLFVKKT SDFAEYSAFQ KEESNSVSLR NSLSSMIPTQ FNIDDGSVSN
201: AGFDTQVCVK PSIILLPPPN NTSSTVSGQD HVNVSEPNWE SNSGTTSHLN NPGMEEMKWS EEYLNESLFS TQVYVKSETD FNSNIAFPWS QSQACDVFPK
301: DLQRMAFSFG GQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.