Factsheet for Solyc01g009650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g005950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	Solyc12g005950.1.1	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P25340_001	Banana	nucleus	62.64	40.14
Bra013900.1-P	Field mustard	nucleus	65.93	27.91
KRH35334	Soybean	nucleus	73.63	24.81
CDY32589	Canola	nucleus	67.03	24.3
Solyc03g025870.2.1	Tomato	nucleus	73.63	24.01
Bra029129.1-P	Field mustard	nucleus	68.13	23.22
CDY38910	Canola	nucleus	68.13	23.22
CDY50197	Canola	nucleus	62.64	22.8
Zm00001d051267_P001	Maize	nucleus	69.23	22.66
CDX94440	Canola	nucleus	63.74	22.57
CDX89413	Canola	nucleus	65.93	22.22
AT5G52260.1	Thale cress	nucleus	64.84	22.01
GSMUA_Achr8P11340_001	Banana	nucleus	67.03	21.94
TraesCS2B01G387700.1	Wheat	nucleus	65.93	21.9
TraesCS2B01G387300.1	Wheat	nucleus	65.93	21.9
CDX92718	Canola	nucleus	62.64	21.76
TraesCS2D01G366800.1	Wheat	nucleus	65.93	21.74
TraesCS2A01G370300.1	Wheat	nucleus	65.93	21.66
GSMUA_Achr4P11960_001	Banana	nucleus	58.24	21.54
GSMUA_Achr4P29410_001	Banana	nucleus	65.93	21.51
CDY64708	Canola	nucleus	60.44	21.32
Bra018027.1-P	Field mustard	nucleus	60.44	21.32
Zm00001d017383_P001	Maize	nucleus	68.13	21.31
TraesCS2A01G370700.1	Wheat	nucleus	64.84	21.3
TraesCS6A01G236700.1	Wheat	nucleus	67.03	21.25
Os04t0532800-01	Rice	nucleus	63.74	21.25
TraesCS2B01G387800.1	Wheat	nucleus	64.84	21.15
TraesCS2D01G367000.1	Wheat	nucleus	64.84	21.0
KRH38485	Soybean	nucleus	67.03	20.96
KRH09018	Soybean	nucleus	67.03	20.96
TraesCS2B01G387500.1	Wheat	nucleus	64.84	20.85
TraesCS2A01G370400.1	Wheat	nucleus	64.84	20.85
VIT_16s0050g00050.t01	Wine grape	nucleus	68.13	20.81
TraesCS6D01G219300.1	Wheat	nucleus	67.03	20.68
TraesCS6B01G265200.1	Wheat	nucleus	67.03	20.68
CDY05881	Canola	nucleus	58.24	20.54
AT4G25560.1	Thale cress	nucleus	63.74	20.49
TraesCS2D01G366900.1	Wheat	nucleus	63.74	20.49
KRG91494	Soybean	nucleus	74.73	20.42
EES07547	Sorghum	nucleus	68.13	20.33
AT3G48920.1	Thale cress	nucleus	57.14	19.92
HORVU2Hr1G091590.1	Barley	nucleus	65.93	19.74
HORVU6Hr1G060610.3	Barley	nucleus	65.93	19.48
EES11177	Sorghum	nucleus	63.74	19.46
GSMUA_Achr1P17480_001	Banana	nucleus	58.24	19.41
EES06150	Sorghum	nucleus	63.74	19.4
Zm00001d014989_P001	Maize	nucleus	64.84	19.16
TraesCS6B01G053100.1	Wheat	nucleus	64.84	19.16
GSMUA_Achr4P05410_001	Banana	nucleus	60.44	18.97
HORVU6Hr1G007010.2	Barley	nucleus	64.84	18.85
GSMUA_Achr2P11450_001	Banana	nucleus	63.74	18.83
TraesCS6D01G043600.1	Wheat	nucleus	64.84	18.67
Solyc06g071690.2.1	Tomato	nucleus	60.44	17.13
HORVU6Hr1G060600.2	Barley	mitochondrion	41.76	17.04
Solyc02g082040.2.1	Tomato	nucleus	60.44	16.98
TraesCS6A01G037700.1	Wheat	nucleus	64.84	16.62
Solyc03g112390.2.1	Tomato	nucleus	59.34	16.62
Solyc10g005240.2.1	Tomato	nucleus	58.24	15.36
Solyc08g081500.1.1	Tomato	nucleus	54.95	15.11
Solyc03g121740.1.1	Tomato	nucleus	60.44	15.07
Solyc11g065840.1.1	Tomato	nucleus	56.04	14.45
Solyc01g087130.2.1	Tomato	nucleus	54.95	14.2
Solyc01g102340.2.1	Tomato	nucleus	63.74	13.62
Solyc10g044680.1.1	Tomato	nucleus	59.34	13.57
Bra019154.1-P	Field mustard	nucleus	62.64	12.36

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4ATG0	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF563
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g009650.1	EnsemblPlants:Solyc01g009650.1.1	UniParc:UPI0002763736

Description

No Description!

Coordinates

chr1:+:3887675..3889231

Molecular Weight (calculated)

10497.8 Da

IEP (calculated)

10.440

GRAVY (calculated)

-0.819

Length

91 amino acids

Sequence
(BLAST)

1: MGCKQIDKSK PKQKHKKGLW SPYEDQKLKD YILKHGHVCW ASVPINAGLQ RTGKSCRLRW INYLRPGLKR GTFSTDEEEA ILTFHGMLGN K

Best Arabidopsis Sequence Match ( AT4G25560.1 )
(BLAST)

001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT

Arabidopsis Description

LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.