Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018207_P001 | |
| Zm00001d052138_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | Zm00001d018207_P001 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | Zm00001d052138_P004 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051267_P001 | Maize | nucleus | 69.07 | 72.3 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 70.79 | 71.78 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 72.51 | 71.53 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 71.13 | 70.17 |
| Zm00001d008206_P001 | Maize | nucleus | 17.18 | 68.49 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.31 | 68.13 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 66.32 | 62.66 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 43.3 | 56.5 |
| Zm00001d023931_P001 | Maize | nucleus | 18.56 | 55.67 |
| Bra013900.1-P | Field mustard | nucleus | 31.62 | 42.79 |
| KRH35334 | Soybean | nucleus | 37.11 | 40.0 |
| Zm00001d014989_P001 | Maize | nucleus | 42.27 | 39.94 |
| Bra018027.1-P | Field mustard | nucleus | 34.71 | 39.15 |
| CDY64708 | Canola | nucleus | 34.71 | 39.15 |
| PGSC0003DMT400037080 | Potato | nucleus | 36.77 | 38.49 |
| CDY32589 | Canola | nucleus | 32.99 | 38.25 |
| KRH09018 | Soybean | nucleus | 37.8 | 37.8 |
| AT5G52260.1 | Thale cress | nucleus | 34.71 | 37.69 |
| KRH38485 | Soybean | nucleus | 37.46 | 37.46 |
| CDY50197 | Canola | nucleus | 31.96 | 37.2 |
| Solyc03g025870.2.1 | Tomato | nucleus | 35.4 | 36.92 |
| CDY05881 | Canola | nucleus | 32.65 | 36.82 |
| CDY38910 | Canola | nucleus | 33.68 | 36.7 |
| Bra029129.1-P | Field mustard | nucleus | 33.68 | 36.7 |
| CDX89413 | Canola | nucleus | 33.33 | 35.93 |
| CDX94440 | Canola | nucleus | 31.62 | 35.8 |
| AT3G48920.1 | Thale cress | nucleus | 31.96 | 35.63 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 36.43 | 35.57 |
| CDX92718 | Canola | nucleus | 31.62 | 35.11 |
| AT4G25560.1 | Thale cress | nucleus | 33.68 | 34.63 |
| KRG91494 | Soybean | nucleus | 37.46 | 32.73 |
| Zm00001d009435_P001 | Maize | nucleus | 25.09 | 28.85 |
| Zm00001d038878_P001 | Maize | nucleus | 30.24 | 27.33 |
| Zm00001d024784_P001 | Maize | nucleus | 22.68 | 25.78 |
| Zm00001d022259_P002 | Maize | nucleus | 30.58 | 25.5 |
| Zm00001d008695_P001 | Maize | nucleus | 24.05 | 25.27 |
| Zm00001d040527_P001 | Maize | nucleus | 24.4 | 25.27 |
| Zm00001d005055_P001 | Maize | nucleus | 19.59 | 25.11 |
| Zm00001d011669_P001 | Maize | nucleus | 20.27 | 24.58 |
| Zm00001d039700_P001 | Maize | nucleus | 19.93 | 24.27 |
| Zm00001d024630_P002 | Maize | nucleus | 29.21 | 23.48 |
| Zm00001d043729_P001 | Maize | nucleus | 18.21 | 23.14 |
| Zm00001d010907_P001 | Maize | nucleus | 32.65 | 22.3 |
| Zm00001d021537_P001 | Maize | nucleus | 21.99 | 21.12 |
| Bra019154.1-P | Field mustard | nucleus | 32.3 | 20.39 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100272454 | MapMan:15.5.2.1 | ProteinID:AQK73044.1 | UniProt:B4FNQ6 | EMBL:BT038744 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EMBL:HQ858714 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00017B6C9C | EnsemblPlantsGene:Zm00001d017383 | EnsemblPlants:Zm00001d017383_P001 |
| EnsemblPlants:Zm00001d017383_T001 | SEG:seg | : | : | : | : |
Description
MYB-transcription factor 26myb domain protein 19
Coordinates
chr5:+:193951312..193955766
Molecular Weight (calculated)
31590.6 Da
IEP (calculated)
5.719
GRAVY (calculated)
-0.667
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACDKPK PNYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLQRN GKSCRLRWIN YLRPGLKHGM FSPEEEETVM SLHATLGNKW SRIARHLPGR
101: TDNEVKNYWN SYLKKRVEGK DQGPSTPAPA ASNSDDDSHC VKQRRDDDGT ADSGASEPRE SSSADDSSCL TDPHACRPHA PVPPKVMFAD WLDMDYVGGA
201: LPATAPAAPG LLGAAGVATA STGDRDQHQV MSMSQGSVQV DGPSGADVSL HGFDDSGAGC WEFQEHFDAI DHMQAAGFCD LLSMSDYFGL D
101: TDNEVKNYWN SYLKKRVEGK DQGPSTPAPA ASNSDDDSHC VKQRRDDDGT ADSGASEPRE SSSADDSSCL TDPHACRPHA PVPPKVMFAD WLDMDYVGGA
201: LPATAPAAPG LLGAAGVATA STGDRDQHQV MSMSQGSVQV DGPSGADVSL HGFDDSGAGC WEFQEHFDAI DHMQAAGFCD LLSMSDYFGL D
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.