Factsheet for Zm00001d005055_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023931_P001	Maize	nucleus	14.98	35.05
EES07893	Sorghum	nucleus	36.12	32.41
Zm00001d008206_P001	Maize	nucleus	9.69	30.14
Zm00001d009435_P001	Maize	nucleus	29.07	26.09
Zm00001d008695_P001	Maize	nucleus	28.63	23.47
PGSC0003DMT400069644	Potato	nucleus	29.96	21.59
Solyc06g071690.2.1	Tomato	nucleus	30.4	21.5
Zm00001d038878_P001	Maize	nucleus	29.96	21.12
PGSC0003DMT400046645	Potato	nucleus	29.96	20.92
Solyc03g112390.2.1	Tomato	nucleus	29.52	20.62
KRH63612	Soybean	nucleus	32.6	20.61
KRH54334	Soybean	nucleus	32.16	20.05
VIT_17s0000g09080.t01	Wine grape	nucleus	31.72	19.83
Zm00001d017383_P001	Maize	nucleus	25.11	19.59
KRH57123	Soybean	nucleus	31.72	19.46
Zm00001d051267_P001	Maize	nucleus	23.35	19.06
Zm00001d014989_P001	Maize	nucleus	25.55	18.83
Zm00001d043729_P001	Maize	nucleus	18.94	18.78
KRH03235	Soybean	nucleus	29.52	18.51
Zm00001d022259_P002	Maize	nucleus	28.19	18.34
Zm00001d010907_P001	Maize	nucleus	33.04	17.61
Zm00001d011669_P001	Maize	nucleus	18.5	17.5
Zm00001d024630_P002	Maize	nucleus	26.43	16.57
Zm00001d024784_P001	Maize	nucleus	18.06	16.02
Zm00001d039700_P001	Maize	nucleus	16.3	15.48
Zm00001d040527_P001	Maize	nucleus	18.5	14.95
Zm00001d021537_P001	Maize	nucleus	15.86	11.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	UniProt:A0A060D1D4	ProteinID:AIB05312.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017930	InterPro:Myb-like_dom
InterPro:Myb_dom	ProteinID:ONM20070.1	PFAM:PF00249	PFscan:PS50090	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF661	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000220796F	EnsemblPlantsGene:Zm00001d005055
EnsemblPlants:Zm00001d005055_P001	EnsemblPlants:Zm00001d005055_T001	SEG:seg	:	:	:

Description

MYB-related-transcription factor 4Transcription factor MYB86

Coordinates

chr2:-:156345821..156346504

Molecular Weight (calculated)

25003.3 Da

IEP (calculated)

6.728

GRAVY (calculated)

-0.750

Length

227 amino acids

Sequence
(BLAST)

001: MDGYDRGAHA GLERSGKSCR LRWMNYLQPD LSREPISRQE EDRIVSLQKL LGNRWSAIAA RMPGRTDNEI KNYWNSLIKK KKKKKLKQSM DTGGGGGDYH
101: QSLPGPEPEP EVHRTAAHEG SSAGMYTTTG TGHIDTSEVR VEHGGTTASH NNDSADHPRP SPLPQLPVFA GQVLLDPDAA VRNGEQTAAP AQASSLSLIP
201: FPKSREMNFV EEYVQFLVSL SDDLLEI

Best Arabidopsis Sequence Match ( AT5G12870.1 )
(BLAST)

001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI

Arabidopsis Description

MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.