Factsheet for Zm00001d038878_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18602	Sorghum	nucleus	83.54	83.54
Zm00001d008206_P001	Maize	nucleus	18.63	82.19
Zm00001d009435_P001	Maize	nucleus	61.18	77.87
Os05t0543600-01	Rice	nucleus	69.25	71.47
Zm00001d023931_P001	Maize	nucleus	18.94	62.89
Zm00001d011669_P001	Maize	nucleus	45.65	61.25
Zm00001d043729_P001	Maize	nucleus	41.93	58.95
PGSC0003DMT400069644	Potato	nucleus	37.58	38.41
Solyc06g071690.2.1	Tomato	nucleus	38.2	38.32
VIT_17s0000g09080.t01	Wine grape	nucleus	41.93	37.19
GSMUA_AchrUn_...	Banana	plasma membrane	35.4	36.77
KRH63612	Soybean	nucleus	40.99	36.77
Solyc03g112390.2.1	Tomato	nucleus	36.96	36.62
PGSC0003DMT400046645	Potato	nucleus	36.96	36.62
KRH57123	Soybean	nucleus	41.61	36.22
KRH54334	Soybean	nucleus	40.37	35.71
KRH03235	Soybean	nucleus	39.75	35.36
Zm00001d022259_P002	Maize	nucleus	37.27	34.38
Zm00001d024784_P001	Maize	nucleus	27.33	34.38
Zm00001d040527_P001	Maize	nucleus	27.64	31.67
Zm00001d051267_P001	Maize	nucleus	27.33	31.65
Zm00001d008695_P001	Maize	nucleus	27.02	31.41
Zm00001d039700_P001	Maize	nucleus	22.67	30.54
Zm00001d010907_P001	Maize	nucleus	40.06	30.28
Zm00001d017383_P001	Maize	nucleus	27.33	30.24
Zm00001d014989_P001	Maize	nucleus	28.88	30.19
Zm00001d005055_P001	Maize	nucleus	21.12	29.96
Zm00001d024630_P002	Maize	nucleus	31.68	28.18
Zm00001d021537_P001	Maize	nucleus	23.29	24.75

Protein Annotations

EnsemblPlants:Zm00001d038878_P001	EnsemblPlants:Zm00001d038878_T001	EnsemblPlantsGene:Zm00001d038878	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF597	PFAM:PF00249	PFscan:PS51294	ProteinID:AQK88135.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00084483F2	UniProt:A0A1D6MBJ3	MapMan:15.5.2.1	:

Description

MYB-transcription factor 99Transcription factor MYB86

Coordinates

chr6:+:166302446..166304056

Molecular Weight (calculated)

34372.9 Da

IEP (calculated)

5.759

GRAVY (calculated)

-0.471

Length

322 amino acids

Sequence
(BLAST)

001: MGRLSCGGGG GGGVQPKLRK GLWSPEEDEK LYNHIIRHGV GCWSTVPKLA GKQSCNSHCW LQRCGKSCRL RWINYLRPDL KRGSFSQQEE DLIVALHEIL
101: GNRWSQIASH LPGRTDNEIK NFWNSCLKKK LRQRGIDPAT HKPVAAAEAS AALPDARDHD REPGGAGAGA DADGLAQQSK QPAAAVFDPF PVVDFGFDLS
201: GGGGVAALYG GPYDAAAGKA SADDGGFVAD YSSVLDVSEN LGYGESSSNS SNWGNGAEMG NAAAAVLDGE VLHWAKPEPY TELEQRSAGQ AAADDDALHH
301: RFLLPCGQEQ SLAHLDFGLE YF

Best Arabidopsis Sequence Match ( AT5G26660.1 )
(BLAST)

001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL

Arabidopsis Description

MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.