Factsheet for Zm00001d022259_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97608	Sorghum	nucleus	89.97	82.41
Zm00001d008206_P001	Maize	nucleus	16.33	78.08
TraesCS2D01G158200.1	Wheat	nucleus	68.48	68.48
TraesCS2B01G177900.1	Wheat	nucleus	68.19	65.93
TraesCS2A01G152700.1	Wheat	nucleus	67.91	65.29
TraesCS2B01G178000.1	Wheat	nucleus	36.39	65.13
TraesCS2A01G152900.1	Wheat	nucleus	44.13	64.44
TraesCS2D01G158300.1	Wheat	nucleus	51.0	62.46
TraesCS7A01G333200.1	Wheat	nucleus	40.11	56.22
Zm00001d023931_P001	Maize	nucleus	15.47	55.67
TraesCS4D01G309700.1	Wheat	nucleus	27.22	43.18
Zm00001d009435_P001	Maize	nucleus	29.23	40.32
TraesCS4A01G411900.1	Wheat	nucleus	27.51	37.94
TraesCS4B01G312100.1	Wheat	nucleus	28.37	37.93
Zm00001d038878_P001	Maize	nucleus	34.38	37.27
Zm00001d040527_P001	Maize	nucleus	27.79	34.52
Zm00001d024784_P001	Maize	nucleus	25.21	34.38
Zm00001d011669_P001	Maize	nucleus	22.64	32.92
Zm00001d039700_P001	Maize	nucleus	22.06	32.22
Zm00001d043729_P001	Maize	nucleus	20.92	31.88
Zm00001d010907_P001	Maize	nucleus	38.68	31.69
Zm00001d051267_P001	Maize	nucleus	24.93	31.3
Zm00001d017383_P001	Maize	nucleus	25.5	30.58
Zm00001d008695_P001	Maize	nucleus	22.92	28.88
Zm00001d005055_P001	Maize	nucleus	18.34	28.19
Zm00001d014989_P001	Maize	nucleus	24.36	27.6
Zm00001d024630_P002	Maize	nucleus	25.21	24.31
Zm00001d021537_P001	Maize	nucleus	20.92	24.09

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100193196	MapMan:15.5.2.1	UniProt:B4FA78	EMBL:BT034016	EMBL:BT035399
EMBL:BT040989	EMBL:BT067525	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	ProteinID:ONM59971.1	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF601	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00017B620F
EnsemblPlantsGene:Zm00001d022259	EnsemblPlants:Zm00001d022259_P002	EnsemblPlants:Zm00001d022259_T002	SEG:seg	:	:

Description

MYB-transcription factor 23Transcription factor MYB46

Coordinates

chr7:+:173850980..173853055

Molecular Weight (calculated)

36936.9 Da

IEP (calculated)

7.032

GRAVY (calculated)

-0.399

Length

349 amino acids

Sequence
(BLAST)

001: MARRTSGPKK KLRRGLWSPE EDDKLVNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SQEEEDLIIH LHSMMGNKWS QIASQLPGRT
101: DNEVKNFWNS YVKKKLRQRG IDPATHKPLP LAAEGISSRT AVFSDAELIL SSSAAAAAAG RHMPPPPVAA SAAESYVYSY SHSSGGASDG SLQSLSGYNS
201: NSKQTAADHL GAAAAAGYLQ QEQDPAAAAA AADALHCGPS GAPAVVLPSV SSSSTLNSMA GLSPAATTTD EQCTNNCSSC SFHSGLEPWL ELGSTSGYYG
301: AALDELKWSD YVFDGGYGGQ PGQGIYGDSK DAVQFVDANA LSSSSWCLN

Best Arabidopsis Sequence Match ( AT5G26660.1 )
(BLAST)

001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL

Arabidopsis Description

MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.