Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G219300.1 | Wheat | nucleus | 81.49 | 85.08 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 78.9 | 84.67 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 80.19 | 83.73 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 58.12 | 80.27 |
| Zm00001d017383_P001 | Maize | nucleus | 62.66 | 66.32 |
| Solyc01g009650.1.1 | Tomato | nucleus | 19.48 | 65.93 |
| EES07547 | Sorghum | nucleus | 65.26 | 65.9 |
| Zm00001d051267_P001 | Maize | nucleus | 57.14 | 63.31 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 49.35 | 50.0 |
| Bra013900.1-P | Field mustard | nucleus | 30.52 | 43.72 |
| KRH09018 | Soybean | nucleus | 38.96 | 41.24 |
| KRH35334 | Soybean | nucleus | 36.04 | 41.11 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 41.23 | 40.58 |
| KRH38485 | Soybean | nucleus | 37.99 | 40.21 |
| PGSC0003DMT400037080 | Potato | nucleus | 35.39 | 39.21 |
| CDY32589 | Canola | nucleus | 30.84 | 37.85 |
| Solyc03g025870.2.1 | Tomato | nucleus | 33.77 | 37.28 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 36.04 | 37.25 |
| Bra018027.1-P | Field mustard | nucleus | 31.17 | 37.21 |
| CDY64708 | Canola | nucleus | 31.17 | 37.21 |
| CDY50197 | Canola | nucleus | 29.87 | 36.8 |
| AT5G52260.1 | Thale cress | nucleus | 31.82 | 36.57 |
| Bra029129.1-P | Field mustard | nucleus | 31.49 | 36.33 |
| CDY38910 | Canola | nucleus | 31.49 | 36.33 |
| CDX89413 | Canola | nucleus | 31.49 | 35.93 |
| CDX94440 | Canola | nucleus | 29.87 | 35.8 |
| CDY05881 | Canola | nucleus | 29.87 | 35.66 |
| AT3G48920.1 | Thale cress | nucleus | 29.87 | 35.25 |
| CDX92718 | Canola | nucleus | 29.87 | 35.11 |
| AT4G25560.1 | Thale cress | nucleus | 32.14 | 34.98 |
| KRG91494 | Soybean | nucleus | 37.01 | 34.23 |
| HORVU3Hr1G066860.11 | Barley | nucleus | 28.9 | 30.27 |
| HORVU3Hr1G047290.2 | Barley | nucleus | 26.62 | 27.06 |
| HORVU3Hr1G016940.1 | Barley | nucleus | 23.7 | 25.52 |
| HORVU7Hr1G082020.1 | Barley | nucleus | 28.25 | 24.86 |
| HORVU7Hr1G072450.2 | Barley | nucleus | 27.27 | 24.63 |
| HORVU1Hr1G079040.4 | Barley | nucleus, plastid | 26.62 | 23.3 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 27.27 | 21.99 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 30.52 | 21.91 |
| Bra019154.1-P | Field mustard | nucleus | 31.82 | 21.26 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 26.3 | 21.2 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 25.97 | 17.24 |
| HORVU1Hr1G079030.2 | Barley | nucleus | 21.43 | 13.92 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G060610.3 | EnsemblPlantsGene:HORVU6Hr1G060610 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | ncoils:Coil |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000B47DDE7 | UniProt:A0A287UD96 | MapMan:15.5.2.1 | : | : |
Description
No Description!
Coordinates
chrchr6H:-:403606343..403612885
Molecular Weight (calculated)
29457.4 Da
IEP (calculated)
6.392
GRAVY (calculated)
-0.556
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACEKPR PSYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR
101: TDNEVKNYWN SYLKKRVEGG KGAPNSPTPA AASSAADSDG SQSPSPGEVI STVQERASRP SNSAGSSEPP HESSSADSSC LTVTEPPACR AYAPVAPKVM
201: FADWLNMDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVMSQGS SAQVDGPPGV EDSLHGGFGD NGTCWEFLEQ FDSMDQMQVG GGGGFCDLLS
301: MTEFFALN
101: TDNEVKNYWN SYLKKRVEGG KGAPNSPTPA AASSAADSDG SQSPSPGEVI STVQERASRP SNSAGSSEPP HESSSADSSC LTVTEPPACR AYAPVAPKVM
201: FADWLNMDXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXVMSQGS SAQVDGPPGV EDSLHGGFGD NGTCWEFLEQ FDSMDQMQVG GGGGFCDLLS
301: MTEFFALN
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
Arabidopsis Description
AtMYB103MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.