Skip to main content
crop-pal logo
Barley
Search for another protein from :
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • nucleus 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:nucleus
MultiLoc:nucleus
WoLF PSORT:nucleus
YLoc:nucleus
 plasma membrane: 18466344
gfp PMID: 18466344 doi
H Schultheiss, J Preuss, T Pircher, R Eichmann, R Hückelhoven
Lehrstuhl für Phytopathologie, Technische Universität München, Freising, Germany.
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G050990.2
HORVU3Hr1G079210.4
HORVU3Hr1G114440.21
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G12720.1 HORVU3Hr1G114440.21 AT1G15570.1 21798944
AT3G12720.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT3G12720.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT3G12720.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT3G12720.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT3G12720.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT3G12720.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT3G12720.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT3G12720.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT3G12720.1 HORVU3Hr1G050990.2 AT3G28715.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G051030.3 Barley nucleus 98.95 98.95
TraesCS2D01G234000.1 Wheat nucleus 89.27 89.27
TraesCS2B01G252000.1 Wheat nucleus 86.65 86.65
TraesCS2A01G230400.1 Wheat nucleus 85.86 86.54
EER97244 Sorghum nucleus 68.06 67.71
Os07t0497500-00 Rice nucleus 67.02 64.0
Zm00001d021537_P001 Maize nucleus 49.21 62.05
GSMUA_Achr9P11190_001 Banana nucleus 46.86 54.74
GSMUA_Achr8P03510_001 Banana nucleus 42.41 50.78
GSMUA_Achr9P25110_001 Banana nucleus 41.62 50.48
PGSC0003DMT400018897 Potato nucleus 37.96 45.31
Solyc02g082040.2.1 Tomato nucleus 38.22 45.06
VIT_19s0085g00940.t01 Wine grape nucleus 39.01 44.21
CDY43404 Canola nucleus 33.51 43.54
CDY42171 Canola nucleus 33.51 43.54
Bra039339.1-P Field mustard nucleus 33.51 43.54
Bra034738.1-P Field mustard nucleus 33.25 43.2
CDY08409 Canola nucleus 33.25 43.2
CDY42172 Canola nucleus 33.25 43.2
Solyc10g005240.2.1 Tomato nucleus 39.01 43.19
AT3G12720.1 Thale cress nucleus 34.55 43.0
VIT_01s0010g00410.t01 Wine grape nucleus 38.22 42.32
KRH43663 Soybean nucleus 35.08 40.98
KRH13791 Soybean nucleus 34.82 40.92
HORVU3Hr1G066860.11 Barley nucleus 27.49 35.71
HORVU3Hr1G047290.2 Barley nucleus 25.39 32.01
HORVU7Hr1G072450.2 Barley nucleus 25.39 28.45
HORVU7Hr1G082020.1 Barley nucleus 25.92 28.29
HORVU6Hr1G007010.2 Barley nucleus 23.04 28.11
HORVU1Hr1G079040.4 Barley nucleus, plastid 25.65 27.84
HORVU2Hr1G091590.1 Barley nucleus 21.99 27.63
HORVU6Hr1G060600.2 Barley mitochondrion 15.71 26.91
HORVU6Hr1G060610.3 Barley nucleus 21.2 26.3
HORVU1Hr1G017970.4 Barley nucleus 26.96 24.01
HORVU3Hr1G016940.1 Barley nucleus 17.54 23.43
HORVU5Hr1G027750.1 Barley nucleus 22.51 18.53
HORVU1Hr1G079030.2 Barley nucleus 17.54 14.13
Protein Annotations
EnsemblPlants:HORVU2Hr1G051010.1EnsemblPlantsGene:HORVU2Hr1G051010Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/MybPANTHER:PTHR10641
PANTHER:PTHR10641:SF702PFAM:PF00249PFscan:PS51294SEG:segSMART:SM00717SUPFAM:SSF46689
UniParc:UPI000B4881DDUniProt:A0A287HZY0MapMan:15.5.2.1:::
Description
No Description!
Coordinates
chrchr2H:+:297362998..297364325
Molecular Weight (calculated)
41203.7 Da
IEP (calculated)
7.002
GRAVY (calculated)
-0.480
Length
382 amino acids
Sequence
(BLAST)
001: MGHHCCSKQK VKRGPWSPEE DEKLLSYITA HGHSCWSAVP RGGGLQRCGK SCRLRWINYL RPDLKRGTFS EQEERTILDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLIAQGL DPKTHNLLPA SKNLLHVHDG TGSGSNPSNN PAAGTQFHSP NGNRNGCATP PFTISSPTKA VYDAAMVAPP VVAPGLYDVP
201: NPGVLMGQHD RDHQAAVVMQ QGYPYIHNNG SGLLMSFRDH NAAGIHPSMD FMNGSSHSSS SMEYAAGMPN GDVFNRGVAV FMDETAAMWA TVPDPGMGAR
301: VEMAYQQQQH HGLGQDEVAG PPPPPLINGG SSGSKGLDMM GVSSEVYGSA GTTTAFDIEL MESCGIFCGA AGNDMEQLQW DC
Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.