Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42171 | Canola | nucleus | 84.04 | 87.76 |
| CDY42172 | Canola | nucleus | 83.39 | 87.07 |
| CDY08409 | Canola | nucleus | 83.39 | 87.07 |
| Bra034738.1-P | Field mustard | nucleus | 83.06 | 86.73 |
| CDY43404 | Canola | nucleus | 82.74 | 86.39 |
| Bra039339.1-P | Field mustard | nucleus | 82.74 | 86.39 |
| KRH13791 | Soybean | nucleus | 48.53 | 45.85 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 50.16 | 45.7 |
| KRH43663 | Soybean | nucleus | 48.21 | 45.26 |
| PGSC0003DMT400018897 | Potato | nucleus | 42.67 | 40.94 |
| Solyc02g082040.2.1 | Tomato | nucleus | 42.35 | 40.12 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 42.35 | 39.76 |
| Solyc10g005240.2.1 | Tomato | nucleus | 43.97 | 39.13 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 39.74 | 38.73 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 40.07 | 38.56 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 44.95 | 36.13 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 44.3 | 35.88 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 44.63 | 35.86 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 43.97 | 35.34 |
| EER97244 | Sorghum | nucleus | 43.32 | 34.64 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 43.0 | 34.55 |
| Os07t0497500-00 | Rice | nucleus | 43.0 | 33.0 |
| AT1G57560.1 | Thale cress | nucleus | 31.92 | 31.21 |
| Zm00001d021537_P001 | Maize | nucleus | 30.62 | 31.02 |
| AT5G12870.1 | Thale cress | nucleus | 26.71 | 29.29 |
| AT4G01680.2 | Thale cress | nucleus | 32.9 | 29.02 |
| AT5G52260.1 | Thale cress | nucleus | 25.08 | 28.73 |
| AT3G13890.1 | Thale cress | nucleus | 33.88 | 28.34 |
| AT4G25560.1 | Thale cress | nucleus | 25.73 | 27.92 |
| AT1G09540.1 | Thale cress | nucleus | 32.9 | 27.6 |
| AT5G26660.1 | Thale cress | nucleus | 31.27 | 27.27 |
| AT3G48920.1 | Thale cress | nucleus | 22.8 | 26.82 |
| AT1G63910.1 | Thale cress | nucleus | 31.6 | 26.22 |
| AT3G08500.1 | Thale cress | nucleus | 27.36 | 24.49 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:820454 | UniProt:A0A178VAX9 | ProteinID:AEE75239.1 | ArrayExpress:AT3G12720 |
| EnsemblPlantsGene:AT3G12720 | RefSeq:AT3G12720 | TAIR:AT3G12720 | RefSeq:AT3G12720-TAIR-G | EnsemblPlants:AT3G12720.1 | TAIR:AT3G12720.1 |
| Symbol:ATY53 | EMBL:AY039554 | EMBL:AY102155 | ProteinID:BAB02416.1 | GO:GO:0000981 | GO:GO:0001135 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_566434.1 | ProteinID:OAP02515.1 |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF702 | UniProt:Q9LTW2 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00000A1C74 | SEG:seg | : | : |
Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
Coordinates
chr3:-:4043288..4044715
Molecular Weight (calculated)
34746.2 Da
IEP (calculated)
7.056
GRAVY (calculated)
-0.707
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.