Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021537_P001 | Maize | nucleus | 70.05 | 88.78 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 70.31 | 70.68 |
| TraesCS2B01G252000.1 | Wheat | nucleus | 69.27 | 69.63 |
| Os07t0497500-00 | Rice | nucleus | 72.4 | 69.5 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 68.23 | 69.13 |
| HORVU2Hr1G051030.3 | Barley | nucleus | 68.49 | 68.85 |
| HORVU2Hr1G051010.1 | Barley | nucleus, plasma membrane | 67.71 | 68.06 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 49.74 | 58.41 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 45.31 | 55.24 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 44.79 | 53.92 |
| Bra034738.1-P | Field mustard | nucleus | 34.64 | 45.24 |
| Bra039339.1-P | Field mustard | nucleus | 34.64 | 45.24 |
| CDY08409 | Canola | nucleus | 34.64 | 45.24 |
| CDY42172 | Canola | nucleus | 34.64 | 45.24 |
| CDY43404 | Canola | nucleus | 34.64 | 45.24 |
| VIT_19s0085g00940.t01 | Wine grape | nucleus | 39.58 | 45.1 |
| CDY42171 | Canola | nucleus | 34.38 | 44.9 |
| PGSC0003DMT400018897 | Potato | nucleus | 36.72 | 44.06 |
| Solyc02g082040.2.1 | Tomato | nucleus | 36.98 | 43.83 |
| AT3G12720.1 | Thale cress | nucleus | 34.64 | 43.32 |
| Solyc10g005240.2.1 | Tomato | nucleus | 37.76 | 42.03 |
| VIT_01s0010g00410.t01 | Wine grape | nucleus | 37.24 | 41.45 |
| KRH43663 | Soybean | nucleus | 35.16 | 41.28 |
| KRH13791 | Soybean | nucleus | 34.11 | 40.31 |
| EES03504 | Sorghum | nucleus | 28.39 | 34.17 |
| EES03490 | Sorghum | nucleus | 27.34 | 33.44 |
| EES18602 | Sorghum | nucleus | 27.34 | 32.61 |
| EER92216 | Sorghum | nucleus | 27.34 | 31.82 |
| EES02393 | Sorghum | nucleus | 22.66 | 31.07 |
| EES06150 | Sorghum | nucleus | 23.44 | 30.1 |
| EES11177 | Sorghum | nucleus | 23.18 | 29.87 |
| OQU86237 | Sorghum | nucleus | 20.83 | 29.74 |
| EES07547 | Sorghum | nucleus | 23.18 | 29.18 |
| EES03100 | Sorghum | nucleus | 25.52 | 28.74 |
| EES07893 | Sorghum | nucleus | 18.23 | 27.67 |
| EES13346 | Sorghum | nucleus | 25.26 | 27.48 |
| EER97608 | Sorghum | nucleus | 26.56 | 26.77 |
| OQU77376 | Sorghum | nucleus | 29.69 | 26.51 |
| EES02806 | Sorghum | nucleus | 28.65 | 25.76 |
| EES17106 | Sorghum | nucleus | 22.66 | 20.81 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:8080706 | UniProt:C5X986 | EnsemblPlants:EER97244 | ProteinID:EER97244 |
| ProteinID:EER97244.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF702 | InterPro:SANT/Myb | SMART:SM00717 |
| EnsemblPlantsGene:SORBI_3002G308400 | SUPFAM:SSF46689 | UniParc:UPI0001A83B9A | RefSeq:XP_002460723.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:+:68272394..68274070
Molecular Weight (calculated)
40715.4 Da
IEP (calculated)
6.824
GRAVY (calculated)
-0.321
Length
384 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHCCSKQK VKRGLWSPEE DEKLVKYITA HGHSCWSAVP KHAGLQRCGK SCRLRWINYL RPDLKRGTFS DHEERTIIDV HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLIAQGL DPKTHNLLPA SRTLLQGGNG ANPSGNNPAQ FHSNGGGAAV GSVATTPFTI SSPTKAAAYD TVTVTPPPEM APAMYDVPNH
201: DGMLMGHDQA AAAPIPAYPY LDNGGGVLMS FRDQNAGLQT SMDFMNGSSS SSSMDHAAGM PNGNGFSQGM GAAAFMDVTA GMWNTAAVDS AMCAGMEVVQ
301: PQQQPLPPPQ GLLQGEMVVG RQAVMNGGGA VADKGMDMMD VSSVYGGAGT TTFDLELMES CALFCGSGVG GATGNAMEQL QWDC
101: NEVKNFWNSC IKKKLIAQGL DPKTHNLLPA SRTLLQGGNG ANPSGNNPAQ FHSNGGGAAV GSVATTPFTI SSPTKAAAYD TVTVTPPPEM APAMYDVPNH
201: DGMLMGHDQA AAAPIPAYPY LDNGGGVLMS FRDQNAGLQT SMDFMNGSSS SSSMDHAAGM PNGNGFSQGM GAAAFMDVTA GMWNTAAVDS AMCAGMEVVQ
301: PQQQPLPPPQ GLLQGEMVVG RQAVMNGGGA VADKGMDMMD VSSVYGGAGT TTFDLELMES CALFCGSGVG GATGNAMEQL QWDC
001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF
Arabidopsis Description
ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.