Factsheet for Bra039339.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P
Bra016654.1-P
Bra026120.1-P
Bra026756.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	Bra016654.1-P	AT1G15570.1	21798944
AT3G12720.1	Bra026120.1-P	AT1G15570.1	21798944
AT3G12720.1	Bra026756.1-P	AT1G15570.1	21798944
AT3G12720.1	Bra000214.1-P	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43404	Canola	nucleus	100.0	100.0
Bra034738.1-P	Field mustard	nucleus	87.42	87.42
AT3G12720.1	Thale cress	nucleus	86.39	82.74
VIT_19s0085g00940.t01	Wine grape	nucleus	51.7	45.1
KRH13791	Soybean	nucleus	49.66	44.92
KRH43663	Soybean	nucleus	49.66	44.65
PGSC0003DMT400018897	Potato	nucleus	45.24	41.56
Solyc02g082040.2.1	Tomato	nucleus	44.56	40.43
GSMUA_Achr9P25110_001	Banana	nucleus	41.84	39.05
GSMUA_Achr9P11190_001	Banana	nucleus	42.18	37.92
Solyc10g005240.2.1	Tomato	nucleus	43.88	37.39
GSMUA_Achr8P03510_001	Banana	nucleus	40.48	37.3
Bra013900.1-P	Field mustard	nucleus	26.53	36.28
TraesCS2D01G234000.1	Wheat	nucleus	46.26	35.6
TraesCS2B01G252000.1	Wheat	nucleus	45.92	35.34
TraesCS2A01G230400.1	Wheat	nucleus	45.24	35.09
EER97244	Sorghum	nucleus	45.24	34.64
HORVU2Hr1G051030.3	Barley	nucleus	44.56	34.29
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	43.54	33.51
Os07t0497500-00	Rice	nucleus	43.2	31.75
Bra029129.1-P	Field mustard	nucleus	27.55	30.34
Bra021515.1-P	Field mustard	nucleus	36.73	30.34
Zm00001d021537_P001	Maize	nucleus	30.95	30.03
Bra008875.1-P	Field mustard	nucleus	28.23	29.64
Bra006166.1-P	Field mustard	nucleus	28.23	29.64
Bra031669.1-P	Field mustard	nucleus	32.65	29.36
Bra020016.1-P	Field mustard	nucleus	32.99	29.22
Bra018027.1-P	Field mustard	nucleus	25.51	29.07
Bra036317.1-P	Field mustard	nucleus	32.65	28.57
Bra027389.1-P	Field mustard	nucleus	33.67	28.45
Bra030783.1-P	Field mustard	nucleus	33.33	28.41
Bra036588.1-P	Field mustard	nucleus	31.63	27.76
Bra027771.1-P	Field mustard	nucleus	32.31	25.96
Bra029696.1-P	Field mustard	nucleus	28.91	25.53
Bra027668.1-P	Field mustard	nucleus	31.63	25.2
Bra001284.1-P	Field mustard	nucleus	28.23	24.41
Bra009910.1-P	Field mustard	nucleus	25.51	22.73
Bra020526.1-P	Field mustard	nucleus	31.97	21.36
Bra023380.1-P	Field mustard	nucleus	12.59	17.79
Bra019154.1-P	Field mustard	nucleus	27.55	17.57

Protein Annotations

EnsemblPlants:Bra039339.1	EnsemblPlants:Bra039339.1-P	EnsemblPlantsGene:Bra039339	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF702	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000253E855	UniProt:M4FE18	MapMan:15.5.2.1	:	:	:

Description

AT3G12720 (E=2e-111) ATY53, ATMYB67 | ATMYB67 (MYB DOMAIN PROTEIN 67); DNA binding / transcription factor

Coordinates

chrScaffold000164:-:3438..4772

Molecular Weight (calculated)

33383.7 Da

IEP (calculated)

8.490

GRAVY (calculated)

-0.610

Length

294 amino acids

Sequence
(BLAST)

001: MRGKWEMKRD EMGHRCCGKH KVNRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGSF TAEEEQTIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSATSSN NNIPKPSKMK SIMTNPTFDL STTAFSITNL NPHTSTKPNK VKSPIRTPLP
201: SQTIIPINNT MSSLLDYENM IPSWSDVDGV APIHEEAPMF SSEKAVVGVD DDYFNMDILF NTPSTTTFDH DFASIFSSAM SIDFNPMDDL GWTF

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.