Factsheet for Bra006166.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78493	Canola	nucleus	99.29	99.29
Bra008875.1-P	Field mustard	nucleus	83.57	83.57
AT5G12870.1	Thale cress	nucleus	82.86	82.86
Bra023380.1-P	Field mustard	nucleus	60.36	81.25
Zm00001d023931_P001	Maize	nucleus	25.0	72.16
Bra001284.1-P	Field mustard	nucleus	43.21	35.59
Bra029696.1-P	Field mustard	nucleus	41.79	35.14
Bra013900.1-P	Field mustard	nucleus	26.79	34.88
TraesCS5B01G105900.1	Wheat	nucleus	43.93	31.54
TraesCS5A01G101000.1	Wheat	nucleus	43.57	31.36
TraesCS5D01G113300.1	Wheat	nucleus	43.21	31.11
EES17106	Sorghum	nucleus	43.93	29.43
Bra029129.1-P	Field mustard	nucleus	27.86	29.21
Bra018027.1-P	Field mustard	nucleus	26.79	29.07
Bra034738.1-P	Field mustard	nucleus	30.36	28.91
Bra031669.1-P	Field mustard	nucleus	33.21	28.44
Bra020016.1-P	Field mustard	nucleus	33.57	28.31
Bra039339.1-P	Field mustard	nucleus	29.64	28.23
Bra036588.1-P	Field mustard	nucleus	32.5	27.16
Bra030783.1-P	Field mustard	nucleus	33.21	26.96
HORVU5Hr1G027750.1	Barley	nucleus	42.14	25.43
Bra036317.1-P	Field mustard	nucleus	30.0	25.0
Bra021515.1-P	Field mustard	nucleus	31.43	24.72
Bra027771.1-P	Field mustard	nucleus	30.36	23.22
Bra027389.1-P	Field mustard	nucleus	28.21	22.7
Bra027668.1-P	Field mustard	nucleus	29.29	22.22
Bra009910.1-P	Field mustard	nucleus	25.71	21.82
Bra020526.1-P	Field mustard	nucleus	31.43	20.0
Bra019154.1-P	Field mustard	nucleus	26.07	15.84

Protein Annotations

EnsemblPlants:Bra006166.1	EnsemblPlants:Bra006166.1-P	EnsemblPlantsGene:Bra006166	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF577	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000253F9E8	UniProt:M4CPM7	MapMan:15.5.2.1	:	:

Description

AT5G12870 (E=5e-120) ATMYB46, MYB46 | MYB46 (MYB DOMAIN PROTEIN 46); DNA binding / transcription factor

Coordinates

chrA03:-:2319153..2321109

Molecular Weight (calculated)

31687.3 Da

IEP (calculated)

6.782

GRAVY (calculated)

-0.651

Length

280 amino acids

Sequence
(BLAST)

001: MRKPEVGSSA THQVKKMKKG LWSPEEDSRL MQYMISSGQG CWSDVAKNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIRFHSIL GNRWSQIAAR
101: LPGRTDNEIK NFWNSTIKKR LKKMSDTSNL VNNSSSSPDT SDLSNNTTSS LELKDIIGSF MSLQEQGFIN PSFTNTPITN NNPFPAPHMI SHPCIDDFTP
201: YVDGLYGVNT GLQGELYFPP LECQEGDWYK ADINSHVAEM KTNGAGNVPA ESMRVEEYWD LDQLMSTEVP SFHFNFKQST

Best Arabidopsis Sequence Match ( AT5G12870.1 )
(BLAST)

001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI

Arabidopsis Description

MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.