Factsheet for Bra013900.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra032610.1-P
Bra033315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	Bra032610.1-P	AT1G02340.1	17699755
AT4G25560.1	Bra033315.1-P	AT1G02340.1	17699755
AT4G25560.1	Bra005541.1-P	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89413	Canola	nucleus	90.23	71.85
Solyc01g009650.1.1	Tomato	nucleus	27.91	65.93
AT4G25560.1	Thale cress	nucleus	73.02	55.48
GSMUA_Achr4P25340_001	Banana	nucleus	34.42	52.11
Bra029129.1-P	Field mustard	nucleus	61.4	49.44
Bra018027.1-P	Field mustard	nucleus	41.86	34.88
KRH35334	Soybean	nucleus	43.72	34.81
Os04t0532800-01	Rice	nucleus	44.19	34.8
Bra019154.1-P	Field mustard	nucleus	73.02	34.06
TraesCS2A01G370700.1	Wheat	nucleus	43.72	33.94
TraesCS2D01G367000.1	Wheat	nucleus	44.19	33.81
TraesCS2D01G366800.1	Wheat	nucleus	43.26	33.7
TraesCS2B01G387800.1	Wheat	nucleus	43.72	33.69
TraesCS2B01G387700.1	Wheat	nucleus	42.79	33.58
TraesCS2B01G387300.1	Wheat	nucleus	42.79	33.58
TraesCS2A01G370300.1	Wheat	nucleus	43.26	33.57
KRH09018	Soybean	nucleus	45.12	33.33
GSMUA_Achr4P11960_001	Banana	nucleus	38.14	33.33
PGSC0003DMT400037080	Potato	nucleus	42.79	33.09
Solyc03g025870.2.1	Tomato	nucleus	42.79	32.97
HORVU6Hr1G060600.2	Barley	mitochondrion	33.95	32.74
GSMUA_Achr4P29410_001	Banana	nucleus	42.33	32.62
TraesCS2A01G370400.1	Wheat	nucleus	42.79	32.51
TraesCS2D01G366900.1	Wheat	nucleus	42.79	32.51
KRH38485	Soybean	nucleus	43.72	32.3
TraesCS2B01G387500.1	Wheat	nucleus	42.33	32.16
Zm00001d051267_P001	Maize	nucleus	41.4	32.01
TraesCS6A01G236700.1	Wheat	nucleus	42.33	31.71
Zm00001d017383_P001	Maize	nucleus	42.79	31.62
TraesCS6D01G219300.1	Wheat	nucleus	42.79	31.19
EES06150	Sorghum	nucleus	43.26	31.1
GSMUA_Achr8P11340_001	Banana	nucleus	40.0	30.94
TraesCS6B01G265200.1	Wheat	nucleus	42.33	30.85
HORVU2Hr1G091590.1	Barley	nucleus	43.26	30.59
EES11177	Sorghum	nucleus	42.33	30.54
HORVU6Hr1G060610.3	Barley	nucleus	43.72	30.52
Zm00001d014989_P001	Maize	nucleus	43.72	30.52
VIT_16s0050g00050.t01	Wine grape	nucleus	41.86	30.2
TraesCS6B01G053100.1	Wheat	nucleus	42.33	29.55
HORVU6Hr1G007010.2	Barley	nucleus	42.79	29.39
GSMUA_Achr2P11450_001	Banana	nucleus	41.4	28.9
EES07547	Sorghum	nucleus	40.93	28.85
GSMUA_Achr1P17480_001	Banana	nucleus	36.28	28.57
TraesCS6D01G043600.1	Wheat	nucleus	41.86	28.48
GSMUA_Achr4P05410_001	Banana	nucleus	38.14	28.28
KRG91494	Soybean	nucleus	43.72	28.23
Bra008875.1-P	Field mustard	nucleus	34.88	26.79
Bra006166.1-P	Field mustard	nucleus	34.88	26.79
Bra039339.1-P	Field mustard	nucleus	36.28	26.53
Bra034738.1-P	Field mustard	nucleus	35.81	26.19
TraesCS6A01G037700.1	Wheat	nucleus	42.33	25.63
Bra031669.1-P	Field mustard	nucleus	37.21	24.46
Bra036317.1-P	Field mustard	nucleus	37.67	24.11
Bra030783.1-P	Field mustard	nucleus	38.14	23.77
Bra020016.1-P	Field mustard	nucleus	35.81	23.19
Bra036588.1-P	Field mustard	nucleus	34.88	22.39
Bra029696.1-P	Field mustard	nucleus	34.42	22.22
Bra021515.1-P	Field mustard	nucleus	36.74	22.19
Bra001284.1-P	Field mustard	nucleus	34.42	21.76
Bra027771.1-P	Field mustard	nucleus	35.81	21.04
Bra027389.1-P	Field mustard	nucleus	32.56	20.11
Bra027668.1-P	Field mustard	nucleus	34.42	20.05
Bra009910.1-P	Field mustard	nucleus	26.51	17.27
Bra020526.1-P	Field mustard	nucleus	34.42	16.82
Bra023380.1-P	Field mustard	nucleus	13.95	14.42

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra013900	EnsemblPlants:Bra013900.1	EnsemblPlants:Bra013900.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DBP0
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF563	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002546A03	SEG:seg	:	:

Description

AT4G25560 (E=4e-078) AtMYB18 | AtMYB18 (myb domain protein 18); DNA binding / transcription factor

Coordinates

chrA01:+:8363529..8364350

Molecular Weight (calculated)

24916.6 Da

IEP (calculated)

10.307

GRAVY (calculated)

-0.743

Length

215 amino acids

Sequence
(BLAST)

001: MAKTKSGEKL KHRQRKGFWS PEEDEKLSRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI NYLRPGLKRD MISTEEEEII LTFHSSLGNK WSMIAKYLPG
101: RTDNEIKNYW HSHLKKRWLK SPSISSSSES RVSCVERNPQ TVVSNHVISF QGPPENTSSS PSHEINGNNK YPCSSGPEIP RIFFSDWFSL LIFYQPLVLH
201: NDHSVLHTSS RERIR

Best Arabidopsis Sequence Match ( AT4G25560.1 )
(BLAST)

001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT

Arabidopsis Description

LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.