Factsheet for GSMUA_Achr4P25340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P20130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	GSMUA_Achr3P20130_001	AT2G32950.1	12827204
AT4G25560.1	GSMUA_AchrUn_...	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009650.1.1	Tomato	nucleus	40.14	62.64
Bra013900.1-P	Field mustard	nucleus	52.11	34.42
GSMUA_Achr8P11340_001	Banana	nucleus	66.9	34.17
GSMUA_Achr4P29410_001	Banana	nucleus	66.9	34.05
GSMUA_Achr11P...	Banana	nucleus	53.52	32.62
KRH35334	Soybean	nucleus	61.97	32.59
GSMUA_Achr4P11960_001	Banana	nucleus	55.63	32.11
PGSC0003DMT400037080	Potato	nucleus	62.68	32.01
CDY32589	Canola	nucleus	55.63	31.47
KRH09018	Soybean	nucleus	63.38	30.93
Solyc03g025870.2.1	Tomato	nucleus	60.56	30.82
GSMUA_Achr2P11450_001	Banana	nucleus	66.2	30.52
KRH38485	Soybean	nucleus	61.97	30.24
GSMUA_Achr4P05410_001	Banana	nucleus	61.27	30.0
CDY50197	Canola	nucleus	52.82	30.0
CDY38910	Canola	nucleus	55.63	29.59
Bra029129.1-P	Field mustard	nucleus	55.63	29.59
GSMUA_AchrUn_...	Banana	nucleus	57.04	29.45
CDX92718	Canola	nucleus	54.23	29.39
CDX94440	Canola	nucleus	52.82	29.18
GSMUA_Achr1P17480_001	Banana	nucleus	55.63	28.94
VIT_16s0050g00050.t01	Wine grape	nucleus	60.56	28.86
AT5G52260.1	Thale cress	nucleus	54.23	28.73
AT4G25560.1	Thale cress	nucleus	55.63	27.92
GSMUA_Achr4P19560_001	Banana	nucleus	54.93	27.56
CDX89413	Canola	nucleus	52.11	27.41
AT3G48920.1	Thale cress	nucleus	50.0	27.2
Bra018027.1-P	Field mustard	nucleus	49.3	27.13
CDY64708	Canola	nucleus	49.3	27.13
CDY05881	Canola	nucleus	48.59	26.74
GSMUA_Achr2P01830_001	Banana	nucleus	57.75	26.71
KRG91494	Soybean	nucleus	60.56	25.83
GSMUA_Achr3P28540_001	Banana	nucleus	54.23	25.08
GSMUA_Achr1P18990_001	Banana	nucleus	58.45	24.85
GSMUA_Achr9P22190_001	Banana	nucleus	54.23	24.44
GSMUA_AchrUn_...	Banana	nucleus	48.59	24.38
GSMUA_Achr8P31350_001	Banana	nucleus	47.18	24.01
GSMUA_Achr4P13280_001	Banana	nucleus	51.41	23.93
GSMUA_Achr6P35800_001	Banana	nucleus	50.0	23.75
GSMUA_Achr7P17250_001	Banana	nucleus	56.34	23.32
GSMUA_Achr3P24580_001	Banana	nucleus	56.34	23.26
GSMUA_Achr10P...	Banana	nucleus	48.59	23.23
GSMUA_Achr4P06410_001	Banana	nucleus	50.0	23.2
GSMUA_Achr9P11190_001	Banana	nucleus	52.11	22.63
GSMUA_Achr8P03510_001	Banana	nucleus	50.7	22.57
GSMUA_Achr2P07780_001	Banana	nucleus	47.18	22.56
GSMUA_Achr3P12200_001	Banana	nucleus	57.04	22.5
GSMUA_Achr9P25110_001	Banana	nucleus	49.3	22.22
GSMUA_Achr6P36930_001	Banana	nucleus	48.59	22.19
GSMUA_Achr1P25120_001	Banana	nucleus	54.93	21.67
GSMUA_Achr2P18440_001	Banana	nucleus	55.63	21.64
GSMUA_Achr8P18730_001	Banana	nucleus	56.34	21.62
GSMUA_Achr11P...	Banana	nucleus	56.34	21.33
GSMUA_Achr5P18400_001	Banana	nucleus	55.63	21.07
GSMUA_Achr2P07930_001	Banana	nucleus	56.34	21.0
GSMUA_AchrUn_...	Banana	plasma membrane	44.37	20.32
Bra019154.1-P	Field mustard	nucleus	52.82	16.27

Protein Annotations

EnsemblPlants:GSMUA_Achr4P25340_001	EnsemblPlants:GSMUA_Achr4T25340_001	EnsemblPlantsGene:GSMUA_Achr4G25340_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF563	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI000296F0A1	UniProt:M0SRZ5	MapMan:15.5.2.1	:	:	:

Description

Transcription factor MYB86 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25340_001]

Coordinates

chr4:-:24901615..24904007

Molecular Weight (calculated)

16679.3 Da

IEP (calculated)

10.880

GRAVY (calculated)

-0.957

Length

142 amino acids

Sequence
(BLAST)

001: MGRKTWEKPK AKHRKGLWSP DEDQRLREHI LEHGHGYWSS VPAKSGLHRS GKSCRLRWIN YLRPGLKLGV FSQEEEETVM KLHAILGNKW SQIAMHLPGR
101: TDNEVKNQWN TYLKKKIKTP GFQPNLSKQL AQLSHKKLYL KF

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.