Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P11740_001 | |
| GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
| AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008206_P001 | Maize | nucleus | 18.31 | 86.3 |
| CDY05516 | Canola | nucleus | 32.85 | 85.61 |
| CDY05331 | Canola | nucleus | 32.56 | 84.85 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.06 | 56.36 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 23.26 | 56.34 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 50.0 | 56.03 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 44.77 | 54.42 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 52.33 | 53.89 |
| GSMUA_Achr11P... | Banana | nucleus | 36.05 | 53.22 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 52.62 | 50.28 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 47.67 | 47.81 |
| CDY22635 | Canola | nucleus | 41.28 | 45.95 |
| AT1G57560.1 | Thale cress | nucleus | 41.86 | 45.86 |
| Bra031669.1-P | Field mustard | nucleus | 43.02 | 45.26 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 48.55 | 45.14 |
| CDY06359 | Canola | nucleus | 40.41 | 45.13 |
| CDX93504 | Canola | nucleus | 38.37 | 44.9 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 46.8 | 44.72 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 47.38 | 44.66 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 49.13 | 44.36 |
| CDY50901 | Canola | nucleus | 38.37 | 44.15 |
| Zm00001d024784_P001 | Maize | nucleus | 32.27 | 43.36 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 47.09 | 43.2 |
| Bra020016.1-P | Field mustard | nucleus | 41.28 | 42.77 |
| Zm00001d040527_P001 | Maize | nucleus | 34.88 | 42.7 |
| GSMUA_Achr11P... | Banana | nucleus | 46.22 | 42.4 |
| CDY32188 | Canola | nucleus | 40.99 | 41.96 |
| AT1G09540.1 | Thale cress | nucleus | 44.48 | 41.8 |
| Bra030783.1-P | Field mustard | nucleus | 41.86 | 41.74 |
| CDY31082 | Canola | nucleus | 41.86 | 41.62 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 35.76 | 40.07 |
| Os05t0140100-01 | Rice | nucleus | 49.13 | 39.58 |
| HORVU1Hr1G017970.4 | Barley | nucleus | 48.84 | 39.16 |
| CDX87038 | Canola | nucleus | 38.37 | 39.05 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 48.55 | 38.93 |
| KRH33726 | Soybean | nucleus | 48.55 | 38.93 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 48.55 | 38.84 |
| OQU77376 | Sorghum | nucleus | 48.55 | 38.84 |
| Bra036588.1-P | Field mustard | nucleus | 37.79 | 38.81 |
| TraesCS1B01G100600.1 | Wheat | nucleus | 48.55 | 38.75 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 35.47 | 38.73 |
| AT5G26660.1 | Thale cress | nucleus | 39.53 | 38.64 |
| KRG90431 | Soybean | nucleus | 47.97 | 38.55 |
| KRH68389 | Soybean | nucleus | 46.8 | 38.52 |
| CDY68301 | Canola | nucleus | 37.5 | 38.51 |
| VIT_14s0060g00240.t01 | Wine grape | nucleus | 49.13 | 38.5 |
| KRG96660 | Soybean | nucleus | 48.55 | 38.48 |
| EES02806 | Sorghum | nucleus | 47.67 | 38.41 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 50.29 | 38.36 |
| PGSC0003DMT400040774 | Potato | nucleus | 45.35 | 38.33 |
| Os01t0285300-01 | Rice | nucleus | 47.67 | 38.32 |
| Zm00001d010907_P001 | Maize | nucleus | 47.38 | 38.26 |
| Bra036317.1-P | Field mustard | nucleus | 36.92 | 37.8 |
| CDY58217 | Canola | nucleus | 36.92 | 37.8 |
| CDY07124 | Canola | nucleus | 36.92 | 37.8 |
| KRH69136 | Soybean | nucleus | 47.38 | 37.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.52 | 37.1 |
| AT4G01680.2 | Thale cress | nucleus | 37.5 | 37.07 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 32.85 | 36.93 |
| KRH68350 | Soybean | nucleus | 44.77 | 36.84 |
| Solyc10g044680.1.1 | Tomato | nucleus | 42.44 | 36.68 |
| PGSC0003DMT400047076 | Potato | nucleus | 45.06 | 36.38 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 29.36 | 36.2 |
| KRH33667 | Soybean | nucleus | 47.97 | 36.18 |
| Solyc01g102340.2.1 | Tomato | nucleus | 44.77 | 36.15 |
| CDX88230 | Canola | nucleus | 37.21 | 35.96 |
| CDX80576 | Canola | nucleus | 37.21 | 35.85 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 29.94 | 34.45 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 29.94 | 33.77 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 27.33 | 33.69 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 29.94 | 33.23 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 22.97 | 32.11 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 27.62 | 31.99 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 30.23 | 31.8 |
| GSMUA_Achr10P... | Banana | nucleus | 27.33 | 31.65 |
| KRG96619 | Soybean | plastid, vacuole | 45.35 | 31.52 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 28.2 | 31.19 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 25.0 | 30.94 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 28.2 | 30.41 |
| Bra009910.1-P | Field mustard | nucleus | 29.07 | 30.3 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 27.33 | 29.84 |
| Bra020526.1-P | Field mustard | nucleus | 36.34 | 28.41 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 25.29 | 28.25 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 22.38 | 28.21 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 23.55 | 27.93 |
| CDY05517 | Canola | plastid | 3.49 | 7.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P24580_001 | EnsemblPlants:GSMUA_Achr3T24580_001 | EnsemblPlantsGene:GSMUA_Achr3G24580_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000296FB73 | UniProt:M0SHH4 | MapMan:15.5.2.1 | : | : |
Description
MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G24580_001]
Coordinates
chr3:+:25066979..25068472
Molecular Weight (calculated)
38008.8 Da
IEP (calculated)
7.703
GRAVY (calculated)
-0.612
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHACCFKQ KLRKGLWSPE EDEKLLNHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGTF SQQEEDLIVE LHAVLGNRWS RIATRLPGRT
101: DNEIKNFWNS CVKKKLKQSG IDPDTHKPLN EADGGEARAA GNGDKASESG EPKKLAPPGS MTATEELGLP RSVESSSLAS SMSYIALQHA SRSSNCDIVN
201: QNMPLWFAQN CRLLDVIPEL SYNTPSTPST SVELKPMPAG LPADASLLPF QYFEACNTSN SSASSGNSSN GVELQSYSPF LDNGIFPWSE LLPNKGAEIH
301: LEGEPEDLKW SEYLNGTIRL TDTIKKQSRC SYGISNGEKH TAIH
101: DNEIKNFWNS CVKKKLKQSG IDPDTHKPLN EADGGEARAA GNGDKASESG EPKKLAPPGS MTATEELGLP RSVESSSLAS SMSYIALQHA SRSSNCDIVN
201: QNMPLWFAQN CRLLDVIPEL SYNTPSTPST SVELKPMPAG LPADASLLPF QYFEACNTSN SSASSGNSSN GVELQSYSPF LDNGIFPWSE LLPNKGAEIH
301: LEGEPEDLKW SEYLNGTIRL TDTIKKQSRC SYGISNGEKH TAIH
001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL
Arabidopsis Description
MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.