Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P20130_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | GSMUA_Achr3P20130_001 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | GSMUA_AchrUn_... | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P11960_001 | Banana | nucleus | 52.07 | 61.38 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 30.0 | 61.27 |
| Solyc01g009650.1.1 | Tomato | nucleus | 18.97 | 60.44 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 42.41 | 45.05 |
| Bra013900.1-P | Field mustard | nucleus | 28.28 | 38.14 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 36.55 | 38.13 |
| KRH09018 | Soybean | nucleus | 36.9 | 36.77 |
| KRH35334 | Soybean | nucleus | 34.14 | 36.67 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 35.17 | 36.56 |
| PGSC0003DMT400037080 | Potato | nucleus | 34.83 | 36.33 |
| CDY32589 | Canola | nucleus | 31.38 | 36.26 |
| Solyc03g025870.2.1 | Tomato | nucleus | 34.83 | 36.2 |
| KRH38485 | Soybean | nucleus | 36.21 | 36.08 |
| AT5G52260.1 | Thale cress | nucleus | 32.07 | 34.7 |
| Bra029129.1-P | Field mustard | nucleus | 31.72 | 34.46 |
| CDY38910 | Canola | nucleus | 31.72 | 34.46 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 36.21 | 34.09 |
| CDY50197 | Canola | nucleus | 29.31 | 34.0 |
| CDX92718 | Canola | nucleus | 30.69 | 33.97 |
| CDX94440 | Canola | nucleus | 30.0 | 33.85 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 33.45 | 32.55 |
| AT4G25560.1 | Thale cress | nucleus | 31.72 | 32.51 |
| CDX89413 | Canola | nucleus | 30.0 | 32.22 |
| Bra018027.1-P | Field mustard | nucleus | 28.28 | 31.78 |
| CDY64708 | Canola | nucleus | 28.28 | 31.78 |
| GSMUA_Achr11P... | Banana | nucleus | 25.17 | 31.33 |
| CDY05881 | Canola | nucleus | 26.9 | 30.23 |
| AT3G48920.1 | Thale cress | nucleus | 26.55 | 29.5 |
| KRG91494 | Soybean | nucleus | 33.45 | 29.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.24 | 28.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.24 | 27.92 |
| GSMUA_Achr2P07780_001 | Banana | nucleus | 28.28 | 27.61 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 26.21 | 26.86 |
| GSMUA_Achr6P35800_001 | Banana | nucleus | 27.24 | 26.42 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 27.93 | 26.38 |
| GSMUA_Achr8P31350_001 | Banana | nucleus | 25.17 | 26.16 |
| GSMUA_Achr3P28540_001 | Banana | nucleus | 27.24 | 25.73 |
| GSMUA_Achr9P11190_001 | Banana | nucleus | 28.62 | 25.38 |
| GSMUA_Achr9P22190_001 | Banana | nucleus | 26.9 | 24.76 |
| GSMUA_Achr4P06410_001 | Banana | nucleus | 25.86 | 24.51 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 28.62 | 24.2 |
| GSMUA_Achr8P03510_001 | Banana | nucleus | 26.55 | 24.14 |
| GSMUA_Achr9P25110_001 | Banana | nucleus | 26.21 | 24.13 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 27.59 | 23.95 |
| GSMUA_Achr4P13280_001 | Banana | nucleus | 25.17 | 23.93 |
| GSMUA_Achr10P... | Banana | nucleus | 24.48 | 23.91 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 25.52 | 23.79 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 27.93 | 23.55 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 28.28 | 22.78 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 28.28 | 22.78 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 23.1 | 21.61 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 27.59 | 21.33 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 26.55 | 21.1 |
| GSMUA_Achr11P... | Banana | nucleus | 27.24 | 21.07 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 26.55 | 20.81 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 26.9 | 20.47 |
| Bra019154.1-P | Field mustard | nucleus | 30.0 | 18.87 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P05410_001 | EnsemblPlants:GSMUA_Achr4T05410_001 | EnsemblPlantsGene:GSMUA_Achr4G05410_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI0002962C1E | UniProt:M0SLA8 | MapMan:15.5.2.1 | : | : |
Description
Putative Transcription factor LAF1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G05410_001]
Coordinates
chr4:+:4187540..4190559
Molecular Weight (calculated)
33658.7 Da
IEP (calculated)
8.529
GRAVY (calculated)
-0.633
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTEFKNCKK PEVDYRKGLW SPDEDQKLRD SILQHGVSCW SEVPAKAGLR RNGKSCRLRW INYLRPGLKR GNFSPEEEET IVKLQSKLGN KWKYYIKTCS
101: IQVWHAYIIL YFIAQKIDDT YALFCYRWSQ IAMQLPGRTD NEVKNHWNSY MKKKITKPQE LHTSSSASSA LNLTIQRLTM HKEENDHGVP SAARGYTEAL
201: EACLKNYDQS VSQNIGGVQN RTAADHFPKV LFADFLSFEQ ANWDSLFNLD DAINNQWHCN NFYTASQVDA QYGNNVICFF ESYQLLSPLP
101: IQVWHAYIIL YFIAQKIDDT YALFCYRWSQ IAMQLPGRTD NEVKNHWNSY MKKKITKPQE LHTSSSASSA LNLTIQRLTM HKEENDHGVP SAARGYTEAL
201: EACLKNYDQS VSQNIGGVQN RTAADHFPKV LFADFLSFEQ ANWDSLFNLD DAINNQWHCN NFYTASQVDA QYGNNVICFF ESYQLLSPLP
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.