Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013900.1-P | Field mustard | nucleus | 71.85 | 90.23 |
| CDX94440 | Canola | nucleus | 82.22 | 86.38 |
| CDY50197 | Canola | nucleus | 70.0 | 75.6 |
| CDX92718 | Canola | nucleus | 72.22 | 74.43 |
| AT4G25560.1 | Thale cress | nucleus | 77.41 | 73.85 |
| Solyc01g009650.1.1 | Tomato | nucleus | 22.22 | 65.93 |
| CDY32589 | Canola | nucleus | 53.7 | 57.77 |
| CDY05516 | Canola | nucleus | 27.78 | 56.82 |
| CDY38910 | Canola | nucleus | 55.93 | 56.55 |
| CDY05331 | Canola | nucleus | 27.41 | 56.06 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 27.41 | 52.11 |
| KRH35334 | Soybean | nucleus | 37.78 | 37.78 |
| Os04t0532800-01 | Rice | nucleus | 37.78 | 37.36 |
| CDY64708 | Canola | nucleus | 35.56 | 37.21 |
| CDY05881 | Canola | nucleus | 35.56 | 37.21 |
| KRH09018 | Soybean | nucleus | 40.0 | 37.11 |
| KRH38485 | Soybean | nucleus | 39.26 | 36.43 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 37.41 | 36.2 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 36.67 | 35.74 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 37.04 | 35.59 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 36.3 | 35.51 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 35.93 | 35.4 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 36.3 | 35.38 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 37.04 | 35.34 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 37.04 | 35.34 |
| PGSC0003DMT400037080 | Potato | nucleus | 36.3 | 35.25 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 35.56 | 35.04 |
| Solyc03g025870.2.1 | Tomato | nucleus | 35.93 | 34.77 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 36.3 | 34.63 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 31.11 | 34.15 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 35.56 | 33.45 |
| Zm00001d017383_P001 | Maize | nucleus | 35.93 | 33.33 |
| Zm00001d051267_P001 | Maize | nucleus | 34.07 | 33.09 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 33.7 | 32.62 |
| EES11177 | Sorghum | nucleus | 35.93 | 32.55 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 35.56 | 32.54 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 35.56 | 32.54 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 26.67 | 32.29 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 35.19 | 31.88 |
| EES06150 | Sorghum | nucleus | 35.19 | 31.77 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 32.59 | 31.65 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 35.56 | 31.58 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 35.93 | 31.49 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 35.93 | 31.49 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 31.11 | 30.77 |
| KRG91494 | Soybean | nucleus | 37.78 | 30.63 |
| Zm00001d014989_P001 | Maize | nucleus | 34.81 | 30.52 |
| EES07547 | Sorghum | nucleus | 34.44 | 30.49 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 34.44 | 30.19 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 34.81 | 30.03 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 32.22 | 30.0 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 34.07 | 29.11 |
| CDX93504 | Canola | nucleus | 30.0 | 27.55 |
| CDY22635 | Canola | nucleus | 31.48 | 27.51 |
| CDX78493 | Canola | nucleus | 28.52 | 27.5 |
| CDY06359 | Canola | nucleus | 31.11 | 27.27 |
| CDX85684 | Canola | nucleus | 28.15 | 27.24 |
| CDY08409 | Canola | nucleus | 29.63 | 27.21 |
| CDY42171 | Canola | nucleus | 29.63 | 27.21 |
| CDY42172 | Canola | nucleus | 29.63 | 27.21 |
| CDY53970 | Canola | nucleus | 28.15 | 27.14 |
| CDY50901 | Canola | nucleus | 30.0 | 27.09 |
| CDY43404 | Canola | nucleus | 29.26 | 26.87 |
| CDX91158 | Canola | nucleus | 27.41 | 26.62 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 34.07 | 25.92 |
| CDY32188 | Canola | nucleus | 31.85 | 25.6 |
| CDY31082 | Canola | nucleus | 32.59 | 25.43 |
| CDY68301 | Canola | nucleus | 29.26 | 23.58 |
| CDX87038 | Canola | nucleus | 29.26 | 23.37 |
| CDY07124 | Canola | nucleus | 28.89 | 23.21 |
| CDY58217 | Canola | nucleus | 28.89 | 23.21 |
| CDX88230 | Canola | nucleus | 30.37 | 23.03 |
| CDY27999 | Canola | nucleus | 28.52 | 22.99 |
| CDY35982 | Canola | nucleus | 28.52 | 22.99 |
| CDX80576 | Canola | nucleus | 30.37 | 22.97 |
| CDX74013 | Canola | nucleus | 28.52 | 22.65 |
| CDY70536 | Canola | nucleus | 28.52 | 22.45 |
| CDY39077 | Canola | nucleus | 29.63 | 22.41 |
| CDY37496 | Canola | nucleus | 29.26 | 22.13 |
| CDY55231 | Canola | nucleus | 26.3 | 21.65 |
| CDX97209 | Canola | nucleus | 28.15 | 21.47 |
| CDX97526 | Canola | nucleus | 25.93 | 20.65 |
| CDY25547 | Canola | nucleus | 28.15 | 20.54 |
| CDY08343 | Canola | nucleus | 27.78 | 20.33 |
| CDY38211 | Canola | nucleus | 27.78 | 20.33 |
| CDY34386 | Canola | extracellular | 11.48 | 10.33 |
| CDY70602 | Canola | nucleus, plastid | 2.96 | 5.13 |
| CDY70493 | Canola | cytosol, plastid | 2.22 | 4.55 |
| CDY05517 | Canola | plastid | 1.11 | 1.75 |
Protein Annotations
| EnsemblPlants:CDX89413 | EnsemblPlantsGene:GSBRNA2T00149653001 | Gene3D:1.10.10.60 | GO:A0A078DQC1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF943 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX89413 | ProteinID:CDX89413.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE6A6C | MapMan:15.5.2.1 | : |
Description
BnaA01g14800D
Coordinates
chrLK031858:-:1467683..1468705
Molecular Weight (calculated)
30908.9 Da
IEP (calculated)
7.896
GRAVY (calculated)
-0.813
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTKSGEKL KHRQRKGFWS PEEDEKLSRF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI NYLRPGLKRD MISTEEEEII LTFHSSLGNK WSMIAKYLPG
101: RTDNEIKNYW HSHLKKRWLK SPSISSSSES RVSCVERNPQ TVVSNHVISF QGPPENTSSS PSHEINGNNK YPCSSGPEIP RLFFSEWFSS SDLTDSSHNQ
201: APSIEGSVLD YQESGDVDQF HYNEIMINNS NWTLDDVVFG SKCQKQEHKV DREASDCNSY GFFFSSSTMT
101: RTDNEIKNYW HSHLKKRWLK SPSISSSSES RVSCVERNPQ TVVSNHVISF QGPPENTSSS PSHEINGNNK YPCSSGPEIP RLFFSEWFSS SDLTDSSHNQ
201: APSIEGSVLD YQESGDVDQF HYNEIMINNS NWTLDDVVFG SKCQKQEHKV DREASDCNSY GFFFSSSTMT
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.