Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G366900.1 | Wheat | nucleus | 96.11 | 96.11 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 94.35 | 94.35 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 87.99 | 89.89 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 87.99 | 89.89 |
| Os04t0532800-01 | Rice | nucleus | 70.32 | 72.89 |
| EES11177 | Sorghum | nucleus | 72.08 | 68.46 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 71.02 | 66.12 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.85 | 64.84 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 61.48 | 60.63 |
| Bra013900.1-P | Field mustard | nucleus | 32.51 | 42.79 |
| KRH35334 | Soybean | nucleus | 39.22 | 41.11 |
| KRH09018 | Soybean | nucleus | 40.64 | 39.52 |
| PGSC0003DMT400037080 | Potato | nucleus | 38.16 | 38.85 |
| KRH38485 | Soybean | nucleus | 39.93 | 38.83 |
| CDY64708 | Canola | nucleus | 35.34 | 38.76 |
| CDY50197 | Canola | nucleus | 33.92 | 38.4 |
| Bra018027.1-P | Field mustard | nucleus | 34.98 | 38.37 |
| CDY32589 | Canola | nucleus | 33.92 | 38.25 |
| CDY05881 | Canola | nucleus | 34.63 | 37.98 |
| AT4G25560.1 | Thale cress | nucleus | 37.81 | 37.81 |
| CDX94440 | Canola | nucleus | 34.28 | 37.74 |
| AT3G48920.1 | Thale cress | nucleus | 34.63 | 37.55 |
| AT5G52260.1 | Thale cress | nucleus | 35.34 | 37.31 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 39.22 | 37.25 |
| CDX92718 | Canola | nucleus | 33.92 | 36.64 |
| Solyc03g025870.2.1 | Tomato | nucleus | 36.04 | 36.56 |
| CDY38910 | Canola | nucleus | 34.28 | 36.33 |
| Bra029129.1-P | Field mustard | nucleus | 34.28 | 36.33 |
| CDX89413 | Canola | nucleus | 34.63 | 36.3 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 41.7 | 33.24 |
| KRG91494 | Soybean | nucleus | 38.52 | 32.73 |
| TraesCS1A01G366200.1 | Wheat | nucleus | 31.1 | 29.73 |
| TraesCS2A01G152900.1 | Wheat | nucleus | 25.09 | 29.71 |
| TraesCS1A01G366100.1 | Wheat | nucleus | 30.39 | 29.45 |
| TraesCS1A01G365900.1 | Wheat | nucleus | 30.74 | 29.29 |
| TraesCS3A01G200300.1 | Wheat | nucleus | 31.1 | 29.14 |
| TraesCS3A01G251200.1 | Wheat | nucleus | 30.04 | 29.01 |
| TraesCS4A01G411900.1 | Wheat | nucleus | 25.44 | 28.46 |
| TraesCS3A01G254500.1 | Wheat | nucleus | 31.1 | 27.85 |
| TraesCS1A01G366300.1 | Wheat | nucleus | 27.92 | 27.34 |
| TraesCS1A01G366000.1 | Wheat | nucleus | 26.5 | 26.79 |
| TraesCS3A01G094300.1 | Wheat | nucleus | 26.15 | 26.62 |
| TraesCS7A01G333200.1 | Wheat | nucleus | 22.97 | 26.1 |
| TraesCS2A01G230400.1 | Wheat | nucleus | 32.51 | 24.27 |
| TraesCS2A01G152700.1 | Wheat | nucleus | 31.1 | 24.24 |
| TraesCS7A01G304500.1 | Wheat | nucleus | 29.33 | 24.2 |
| TraesCS1A01G083100.2 | Wheat | nucleus | 35.69 | 23.49 |
| Bra019154.1-P | Field mustard | nucleus | 35.34 | 21.69 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 28.62 | 20.82 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G370400.1 | EnsemblPlantsGene:TraesCS2A01G370400 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:613173600..613175773
Molecular Weight (calculated)
30618.2 Da
IEP (calculated)
7.236
GRAVY (calculated)
-0.482
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKSCQKPK AQHRKGLWSP EEDQKLRDFI VRYGHSCWST VPVKAGLQRN GKSCRLRWIN YLRPGLKHGM FSRAEEETVM SLHATLGNKW SQIAQHLPGR
101: TDNEVKNYWN SYLKKRVEGA RSPAKSAGSD APRSPTPSDS ARERSTVNQP SISGSSGPLE SSSMADDSSN LTVPGVVASI RPHTPVLPKV MFADWLDMDM
201: DMDYGTGLMA PSALDAAFDG SPAQQGVSHQ GGVQVDGMCG AVDSLHGLGN EGICWEFDAG QIHMQGGAGL CDLLSVSEFL GIN
101: TDNEVKNYWN SYLKKRVEGA RSPAKSAGSD APRSPTPSDS ARERSTVNQP SISGSSGPLE SSSMADDSSN LTVPGVVASI RPHTPVLPKV MFADWLDMDM
201: DMDYGTGLMA PSALDAAFDG SPAQQGVSHQ GGVQVDGMCG AVDSLHGLGN EGICWEFDAG QIHMQGGAGL CDLLSVSEFL GIN
001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV
Arabidopsis Description
AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.