Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0771100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | Os02t0771100-01 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G366800.1 | Wheat | nucleus | 73.63 | 72.83 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 73.26 | 72.2 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 73.99 | 71.89 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 72.53 | 71.48 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 72.89 | 71.33 |
| EES11177 | Sorghum | nucleus | 77.29 | 70.81 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 71.06 | 70.8 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 72.89 | 70.32 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 70.33 | 70.07 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 72.53 | 69.96 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 70.33 | 67.84 |
| Solyc01g009650.1.1 | Tomato | nucleus | 21.25 | 63.74 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 58.61 | 52.63 |
| Bra013900.1-P | Field mustard | nucleus | 34.8 | 44.19 |
| KRH35334 | Soybean | nucleus | 39.19 | 39.63 |
| CDY50197 | Canola | nucleus | 35.53 | 38.8 |
| CDX94440 | Canola | nucleus | 35.9 | 38.13 |
| CDX89413 | Canola | nucleus | 37.36 | 37.78 |
| PGSC0003DMT400037080 | Potato | nucleus | 38.1 | 37.41 |
| KRH09018 | Soybean | nucleus | 39.56 | 37.11 |
| AT4G25560.1 | Thale cress | nucleus | 38.46 | 37.1 |
| CDY32589 | Canola | nucleus | 34.07 | 37.05 |
| CDX92718 | Canola | nucleus | 35.16 | 36.64 |
| AT5G52260.1 | Thale cress | nucleus | 35.9 | 36.57 |
| CDY64708 | Canola | nucleus | 34.43 | 36.43 |
| CDY05881 | Canola | nucleus | 34.43 | 36.43 |
| KRH38485 | Soybean | nucleus | 38.83 | 36.43 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 39.56 | 36.24 |
| Bra018027.1-P | Field mustard | nucleus | 34.07 | 36.05 |
| AT3G48920.1 | Thale cress | nucleus | 34.07 | 35.63 |
| Solyc03g025870.2.1 | Tomato | nucleus | 36.26 | 35.48 |
| Bra029129.1-P | Field mustard | nucleus | 34.43 | 35.21 |
| CDY38910 | Canola | nucleus | 34.43 | 35.21 |
| KRG91494 | Soybean | nucleus | 38.83 | 31.83 |
| Os01t0702700-01 | Rice | nucleus | 32.6 | 29.57 |
| Os05t0543600-01 | Rice | nucleus | 31.87 | 27.88 |
| Os01t0709000-01 | Rice | nucleus | 31.14 | 27.69 |
| Os08t0151300-01 | Rice | nucleus | 30.77 | 23.4 |
| Os05t0140100-01 | Rice | nucleus | 35.53 | 22.72 |
| Os03t0371800-00 | Rice | nucleus | 32.97 | 22.61 |
| Os07t0497500-00 | Rice | nucleus | 32.6 | 22.25 |
| Os01t0285300-01 | Rice | nucleus | 34.8 | 22.2 |
| Bra019154.1-P | Field mustard | nucleus | 36.26 | 21.48 |
| Os12t0515300-00 | Rice | nucleus | 14.65 | 12.78 |
| Os07t0634900-00 | Rice | plastid | 15.38 | 11.63 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:4336500 | EMBL:AK107135 | ProteinID:BAF15320.1 | ProteinID:BAS90227.1 |
| ProteinID:CAE04569.1 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| EnsemblPlantsGene:Os04g0532800 | EnsemblPlants:Os04t0532800-01 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF748 |
| UniProt:Q7XML0 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00001B1A8E | RefSeq:XP_015636234.1 |
| SEG:seg | : | : | : | : | : |
Description
R2R3-MYBMyb transcription factor domain containing protein. (Os04t0532800-01)
Coordinates
chr4:+:26638119..26640661
Molecular Weight (calculated)
29537.6 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.514
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACQKPK VHYRKGLWSP EEDQKLRDFI LRYGHGCWSA VPVKAGLQRN GKSCRLRWIN YLRPGLKHGM FSREEEETVM NLHATMGNKW SQIARHLPGR
101: TDNEVKNYWN SYLKKRVEGA EAAARKSAEP ADVVTGSPNR SETGQERVAA DRPASSESSG PVESSSADDS SSLTEPAAGL AAVRPHAPVI PKVMFADWFD
201: MDYGTSLAGT APGLSYQGSS SVQVDVPCGG AVDSLHGLGD GGFCWDFDDA ADHMQGGGGL CDLLSMSEFL GIN
101: TDNEVKNYWN SYLKKRVEGA EAAARKSAEP ADVVTGSPNR SETGQERVAA DRPASSESSG PVESSSADDS SSLTEPAAGL AAVRPHAPVI PKVMFADWFD
201: MDYGTSLAGT APGLSYQGSS SVQVDVPCGG AVDSLHGLGD GGFCWDFDDA ADHMQGGGGL CDLLSMSEFL GIN
001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT
Arabidopsis Description
LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.