CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG31183

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	KXG31183	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0532800-01	Rice	nucleus	70.81	77.29
TraesCS2D01G366800.1	Wheat	nucleus	69.46	75.0
TraesCS2A01G370300.1	Wheat	nucleus	69.46	74.73
TraesCS2D01G367000.1	Wheat	nucleus	69.46	73.67
TraesCS2B01G387800.1	Wheat	nucleus	68.79	73.48
TraesCS2A01G370700.1	Wheat	nucleus	68.12	73.29
TraesCS2B01G387300.1	Wheat	nucleus	67.11	72.99
TraesCS2B01G387700.1	Wheat	nucleus	67.11	72.99
TraesCS2A01G370400.1	Wheat	nucleus	68.46	72.08
TraesCS2D01G366900.1	Wheat	nucleus	68.46	72.08
TraesCS2B01G387500.1	Wheat	nucleus	67.11	70.67
Solyc01g009650.1.1	Tomato	nucleus	19.46	63.74
EES07547	Sorghum	nucleus	59.73	58.36
HORVU2Hr1G091590.1	Barley	nucleus	55.37	54.28
Bra013900.1-P	Field mustard	nucleus	30.54	42.33
EES06150	Sorghum	nucleus	41.61	41.47
KRH35334	Soybean	nucleus	36.24	40.0
CDY64708	Canola	nucleus	33.56	38.76
Bra018027.1-P	Field mustard	nucleus	33.22	38.37
KRH09018	Soybean	nucleus	37.25	38.14
PGSC0003DMT400037080	Potato	nucleus	35.57	38.13
CDY05881	Canola	nucleus	32.55	37.6
AT3G48920.1	Thale cress	nucleus	32.89	37.55
KRH38485	Soybean	nucleus	36.58	37.46
CDY50197	Canola	nucleus	30.87	36.8
CDY32589	Canola	nucleus	30.87	36.65
VIT_16s0050g00050.t01	Wine grape	nucleus	36.58	36.58
CDX94440	Canola	nucleus	31.54	36.58
CDX89413	Canola	nucleus	32.55	35.93
Solyc03g025870.2.1	Tomato	nucleus	33.56	35.84
AT5G52260.1	Thale cress	nucleus	32.21	35.82
CDX92718	Canola	nucleus	31.21	35.5
AT4G25560.1	Thale cress	nucleus	33.22	34.98
Bra029129.1-P	Field mustard	nucleus	30.87	34.46
CDY38910	Canola	nucleus	30.87	34.46
KRG91494	Soybean	nucleus	35.57	31.83
EES02393	Sorghum	nucleus	27.52	29.29
EES18602	Sorghum	nucleus	31.54	29.19
EES03490	Sorghum	nucleus	30.54	28.98
EER92216	Sorghum	nucleus	31.21	28.18
OQU86237	Sorghum	nucleus	24.16	26.77
EES03100	Sorghum	nucleus	30.54	26.69
EES03504	Sorghum	nucleus	28.19	26.33
EES07893	Sorghum	nucleus	21.81	25.69
EES13346	Sorghum	nucleus	29.19	24.65
EER97608	Sorghum	nucleus	30.54	23.88
OQU77376	Sorghum	nucleus	34.23	23.72
EER97244	Sorghum	nucleus	29.87	23.18
EES02806	Sorghum	nucleus	32.89	22.95
EES17106	Sorghum	nucleus	29.53	21.05
Bra019154.1-P	Field mustard	nucleus	31.88	20.61

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EntrezGene:8056047	UniProt:C5YCX0	EnsemblPlants:EES11177	ProteinID:EES11177
ProteinID:EES11177.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF748	InterPro:SANT/Myb	SMART:SM00717
EnsemblPlantsGene:SORBI_3006G159100	SUPFAM:SSF46689	UniParc:UPI0001A86EF3	RefSeq:XP_002446849.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:51761875..51765908

Molecular Weight (calculated)

31826.2 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.512

Length

298 amino acids

Sequence
(BLAST)

001: MGCKACQKPK VQYRKGLWSP EEDEKLRDYI LRYGHGCWSA LPLKAGLQRN GKSCRLRWIN YLRPGLKHGV FSREEEETVM SLHAKLGNKW SQIARHLPGR
101: TDNEVKNYWN SYLKKRVEGG AQGKHGAADP ATPGRSDVHG SPDDPSENNG QGSVVSRPAN SDSSEPAVES SSADDSSCLT VTEPAGARAS ATAAVRPHAP
201: VLPKVMFADW LDMDYGTSLV ALGPDAGVFD VGGRSPAQGL SHQGSSVQVD GPSCGAVDSL HGLGGMCWEF DAAADQLDVQ GGGGFCDLLS MSEFLGIN

Best Arabidopsis Sequence Match ( AT4G25560.1 )
(BLAST)

001: MAKTKYGERH RKGLWSPEED EKLRSFILSY GHSCWTTVPI KAGLQRNGKS CRLRWINYLR PGLKRDMISA EEEETILTFH SSLGNKWSQI AKFLPGRTDN
101: EIKNYWHSHL KKKWLKSQSL QDAKSISPPS SSSSSLVACG KRNPETLISN HVFSFQRLLE NKSSSPSQES NGNNSHQCSS APEIPRLFFS EWLSSSYPHT
201: DYSSEFTDSK HSQAPNVEET LSAYEEMGDV DQFHYNEMMI NNSNWTLNDI VFGSKCKKQE HHIYREASDC NSSAEFFSPS TTT

Arabidopsis Description

LAF1Transcription factor LAF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0K4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.