Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | KRH14801 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | KRH73341 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35334 | Soybean | nucleus | 73.57 | 90.74 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.42 | 74.73 |
| KRH09018 | Soybean | nucleus | 57.06 | 65.29 |
| KRH38485 | Soybean | nucleus | 54.95 | 62.89 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 25.83 | 60.56 |
| PGSC0003DMT400037080 | Potato | nucleus | 41.44 | 49.64 |
| Solyc03g025870.2.1 | Tomato | nucleus | 40.24 | 48.03 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 42.34 | 47.32 |
| Bra013900.1-P | Field mustard | nucleus | 28.23 | 43.72 |
| CDY32589 | Canola | nucleus | 30.93 | 41.04 |
| AT5G52260.1 | Thale cress | nucleus | 32.73 | 40.67 |
| CDY50197 | Canola | nucleus | 30.33 | 40.4 |
| CDX94440 | Canola | nucleus | 30.93 | 40.08 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 34.53 | 40.07 |
| Bra029129.1-P | Field mustard | nucleus | 31.83 | 39.7 |
| CDY38910 | Canola | nucleus | 31.83 | 39.7 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 35.14 | 39.66 |
| Bra018027.1-P | Field mustard | nucleus | 30.63 | 39.53 |
| CDY64708 | Canola | nucleus | 30.63 | 39.53 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 33.33 | 39.5 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 34.53 | 38.98 |
| Os04t0532800-01 | Rice | nucleus | 31.83 | 38.83 |
| CDY05881 | Canola | nucleus | 30.03 | 38.76 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 32.43 | 38.71 |
| AT3G48920.1 | Thale cress | nucleus | 30.33 | 38.7 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 31.83 | 38.69 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 32.13 | 38.63 |
| CDX92718 | Canola | nucleus | 30.33 | 38.55 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 32.73 | 38.52 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 31.83 | 38.41 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 31.53 | 38.32 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 31.83 | 38.27 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 28.23 | 38.21 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 31.83 | 38.13 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 31.83 | 37.99 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 32.13 | 37.81 |
| CDX89413 | Canola | nucleus | 30.63 | 37.78 |
| Zm00001d017383_P001 | Maize | nucleus | 32.73 | 37.46 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 31.83 | 37.46 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 30.63 | 37.36 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 34.23 | 37.01 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 24.62 | 36.77 |
| AT4G25560.1 | Thale cress | nucleus | 31.23 | 36.75 |
| Zm00001d051267_P001 | Maize | nucleus | 30.63 | 36.69 |
| EES11177 | Sorghum | nucleus | 31.83 | 35.57 |
| EES07547 | Sorghum | nucleus | 32.13 | 35.08 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 31.83 | 34.87 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 29.13 | 33.45 |
| EES06150 | Sorghum | nucleus | 30.03 | 33.44 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 30.93 | 33.44 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 30.63 | 33.12 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 30.93 | 32.91 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 30.93 | 32.59 |
| Zm00001d014989_P001 | Maize | nucleus | 28.83 | 31.17 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 31.53 | 29.58 |
| KRH41236 | Soybean | nucleus | 25.83 | 26.79 |
| KRH77586 | Soybean | nucleus | 26.13 | 26.69 |
| KRH59965 | Soybean | nucleus | 25.53 | 26.56 |
| KRH20828 | Soybean | nucleus | 24.62 | 26.37 |
| KRH47101 | Soybean | nucleus | 27.33 | 25.85 |
| KRH27893 | Soybean | nucleus | 25.23 | 25.85 |
| KRH44125 | Soybean | nucleus | 27.03 | 25.79 |
| KRH10036 | Soybean | nucleus | 27.33 | 25.78 |
| KRH43663 | Soybean | nucleus | 25.23 | 25.69 |
| KRH23131 | Soybean | nucleus | 25.53 | 25.68 |
| KRG93751 | Soybean | nucleus | 25.83 | 25.6 |
| KRH13791 | Soybean | nucleus | 24.92 | 25.54 |
| KRH27485 | Soybean | nucleus | 24.02 | 25.4 |
| KRH24713 | Soybean | nucleus | 25.53 | 25.3 |
| KRH10204 | Soybean | nucleus | 25.23 | 25.15 |
| KRH29717 | Soybean | nucleus | 25.53 | 25.0 |
| KRH18309 | Soybean | nucleus | 25.53 | 24.93 |
| KRH63612 | Soybean | nucleus | 26.73 | 24.79 |
| KRH54334 | Soybean | nucleus | 26.13 | 23.9 |
| KRH57123 | Soybean | nucleus | 25.83 | 23.24 |
| KRH68389 | Soybean | nucleus | 28.83 | 22.97 |
| KRG90431 | Soybean | nucleus | 29.43 | 22.9 |
| KRH33726 | Soybean | nucleus | 29.43 | 22.84 |
| KRH68350 | Soybean | nucleus | 28.53 | 22.73 |
| KRH03235 | Soybean | nucleus | 24.62 | 22.65 |
| KRG96660 | Soybean | nucleus | 29.43 | 22.58 |
| Bra019154.1-P | Field mustard | nucleus | 30.63 | 22.13 |
| KRH69136 | Soybean | nucleus | 28.53 | 21.89 |
| KRH33667 | Soybean | nucleus | 29.13 | 21.27 |
| KRG96619 | Soybean | plastid, vacuole | 31.23 | 21.01 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:778167 | UniProt:A0A0R0ECB4 | EMBL:ACUP02012689 | EnsemblPlantsGene:GLYMA_20G157900 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EnsemblPlants:KRG91494 | ProteinID:KRG91494 |
| ProteinID:KRG91494.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0006EDD560 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr20:+:39663180..39667345
Molecular Weight (calculated)
37936.1 Da
IEP (calculated)
9.882
GRAVY (calculated)
-0.636
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVRTIFSY SNFNMHPLVD SSRLSGSLLL PFISSTAYIS HRNRTKTENP SLPLKWNSVR LSKMGYQPLE KGKPKHKKGL WSPEEDNKLR NHILKHGHGC
101: WSSVPIKAGL QRNGKSCRLR WINYLRPGLK RGKFSKQEEE TILTLHHMLG NKWSRISQHL PGRTDNEIKN YWHSYLKKRV AKAKEMESHN QIKYASSSSD
201: TMDSSHSLQN LATQCPLNYN FTKEASQSSL PKLLFAEWLS LDHLNSANSV DSLGLRNGFD QNSSFHEAAI HDMSEVPFGG EYNRCVSNIS APEMFNSQLK
301: YGNQMVENGY IHCMPGVDLS SNFSISNDAI MYI
101: WSSVPIKAGL QRNGKSCRLR WINYLRPGLK RGKFSKQEEE TILTLHHMLG NKWSRISQHL PGRTDNEIKN YWHSYLKKRV AKAKEMESHN QIKYASSSSD
201: TMDSSHSLQN LATQCPLNYN FTKEASQSSL PKLLFAEWLS LDHLNSANSV DSLGLRNGFD QNSSFHEAAI HDMSEVPFGG EYNRCVSNIS APEMFNSQLK
301: YGNQMVENGY IHCMPGVDLS SNFSISNDAI MYI
001: MKRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLERCG KSCRLRWINY LRPDLKRGAF SSEEQNLIVE LHAVLGNRWS QIAARLPGRT
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EKEESNSVSL RNSLSSMIPT QFNIDDGSVS NAGFDTQVCV KPSIILLPPP NNTSSTVSGQ DHVNVSEPNW
201: ESNSGTTSHL NNPGMEEMKW SEEYLNESLF STQVYVKSET DFNSNIAFPW SQSQACDVFP KDLQRMAFSF GGQTL
101: DNEIKNLWNS CIKKKLMKKG IDPITHKPLS EKEESNSVSL RNSLSSMIPT QFNIDDGSVS NAGFDTQVCV KPSIILLPPP NNTSSTVSGQ DHVNVSEPNW
201: ESNSGTTSHL NNPGMEEMKW SEEYLNESLF STQVYVKSET DFNSNIAFPW SQSQACDVFP KDLQRMAFSF GGQTL
Arabidopsis Description
AtMYB50At1g57560 [Source:UniProtKB/TrEMBL;Acc:Q9C695]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.