Factsheet for PGSC0003DMT400037080

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25560.1	PGSC0003DMT400036075	AT2G32950.1	12827204

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025870.2.1	Tomato	nucleus	93.53	93.19
GSMUA_Achr4P25340_001	Banana	nucleus	32.01	62.68
KRH35334	Soybean	nucleus	49.28	50.74
VIT_16s0050g00050.t01	Wine grape	nucleus	53.6	50.0
KRH38485	Soybean	nucleus	48.2	46.05
KRH09018	Soybean	nucleus	47.48	45.36
Bra013900.1-P	Field mustard	nucleus	33.09	42.79
KRG91494	Soybean	nucleus	49.64	41.44
GSMUA_Achr4P11960_001	Banana	nucleus	35.61	40.24
CDY32589	Canola	nucleus	36.33	40.24
TraesCS2D01G366800.1	Wheat	nucleus	39.93	40.22
TraesCS2B01G387300.1	Wheat	nucleus	39.57	40.15
TraesCS2A01G370300.1	Wheat	nucleus	39.93	40.07
AT5G52260.1	Thale cress	nucleus	38.49	39.93
GSMUA_Achr4P29410_001	Banana	nucleus	39.93	39.78
CDY38910	Canola	nucleus	38.13	39.7
Bra029129.1-P	Field mustard	nucleus	38.13	39.7
TraesCS2B01G387700.1	Wheat	nucleus	38.49	39.05
TraesCS2A01G370700.1	Wheat	nucleus	38.49	38.63
TraesCS2D01G366900.1	Wheat	nucleus	39.21	38.52
TraesCS2D01G367000.1	Wheat	nucleus	38.85	38.43
Bra018027.1-P	Field mustard	nucleus	35.61	38.37
CDY64708	Canola	nucleus	35.61	38.37
TraesCS2B01G387800.1	Wheat	nucleus	38.49	38.35
TraesCS2A01G370400.1	Wheat	nucleus	38.85	38.16
TraesCS2B01G387500.1	Wheat	nucleus	38.85	38.16
Zm00001d051267_P001	Maize	nucleus	38.13	38.13
Os04t0532800-01	Rice	nucleus	37.41	38.1
TraesCS6A01G236700.1	Wheat	nucleus	39.21	37.98
CDY50197	Canola	nucleus	33.81	37.6
CDY05881	Canola	nucleus	34.89	37.6
GSMUA_Achr1P17480_001	Banana	nucleus	36.69	37.36
CDX94440	Canola	nucleus	34.17	36.97
TraesCS6D01G219300.1	Wheat	nucleus	39.21	36.95
AT3G48920.1	Thale cress	nucleus	34.53	36.78
Zm00001d017383_P001	Maize	nucleus	38.49	36.77
CDX92718	Canola	nucleus	34.53	36.64
TraesCS6B01G265200.1	Wheat	nucleus	38.85	36.61
AT4G25560.1	Thale cress	nucleus	37.05	36.4
CDX89413	Canola	nucleus	35.25	36.3
GSMUA_Achr2P11450_001	Banana	nucleus	39.93	36.04
GSMUA_Achr8P11340_001	Banana	nucleus	35.97	35.97
HORVU6Hr1G060600.2	Barley	mitochondrion	28.78	35.87
EES11177	Sorghum	nucleus	38.13	35.57
EES06150	Sorghum	nucleus	38.13	35.45
HORVU6Hr1G060610.3	Barley	nucleus	39.21	35.39
GSMUA_Achr4P05410_001	Banana	nucleus	36.33	34.83
EES07547	Sorghum	nucleus	38.13	34.75
Zm00001d014989_P001	Maize	nucleus	38.49	34.74
HORVU2Hr1G091590.1	Barley	nucleus	37.77	34.54
TraesCS6B01G053100.1	Wheat	nucleus	38.13	34.42
HORVU6Hr1G007010.2	Barley	nucleus	38.49	34.19
TraesCS6D01G043600.1	Wheat	nucleus	38.85	34.18
TraesCS6A01G037700.1	Wheat	nucleus	38.49	30.14
PGSC0003DMT400087467	Potato	nucleus	27.7	28.0
PGSC0003DMT400018897	Potato	nucleus	30.94	26.88
PGSC0003DMT400069644	Potato	nucleus	30.22	26.67
PGSC0003DMT400046645	Potato	nucleus	29.5	25.23
PGSC0003DMT400018995	Potato	nucleus	29.14	23.08
PGSC0003DMT400047076	Potato	nucleus	33.81	22.07
PGSC0003DMT400017709	Potato	nucleus	28.06	21.97
Bra019154.1-P	Field mustard	nucleus	34.89	21.04
PGSC0003DMT400040774	Potato	nucleus	29.86	20.39

Protein Annotations

EnsemblPlants:PGSC0003DMT400037080	EnsemblPlantsGene:PGSC0003DMG400014291	EntrezGene:102597000	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF563	PFAM:PF00249	PFscan:PS51294	PGSC:PGSC0003DMG400014291	RefSeq:XP_006353308.1
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000294ECAC	UniProt:M1B4S4	MapMan:15.5.2.1	:

Description

ATMYB4 [Source:PGSC_GENE;Acc:PGSC0003DMG400014291]

Coordinates

chr3:+:42885406..42890857

Molecular Weight (calculated)

31569.8 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.864

Length

278 amino acids

Sequence
(BLAST)

001: MGCKVAAEKP KQKHKKGLWS PDEDDRLKNY IIKHGHGCWS SVPINAGLQR NGKSCRLRWI NYLRPGLKRG AFSLEEEDTI LTLHAMFGNK WSQIAQHLPG
101: RTDNEIKNHW HSYLKKRVSK MAENEGHTKS GKTDSSPSLK KLTPQNSSLD SFEHIEGSLA DSDQSVYPRE PQKSNLPKVL FAEWLSLDQF NGQDFQNSGS
201: FEPSKSNFGY NNAELHDIFM HSLPMNNDGS SSYGNGVNQE IHNDIFPPQL KFEDTMSGNG FEEFMSGEFN INDDVMYI

Best Arabidopsis Sequence Match ( AT5G52260.1 )
(BLAST)

001: MTKSGERPKQ RQRKGLWSPE EDQKLKSFIL SRGHACWTTV PILAGLQRNG KSCRLRWINY LRPGLKRGSF SEEEEETILT LHSSLGNKWS RIAKYLPGRT
101: DNEIKNYWHS YLKKRWLKSQ PQLKSQISDL TESPSSLLSC GKRNLETETL DHVISFQKFS ENPTSSPSKE SNNNMIMNNS NNLPKLFFSE WISSSNPHID
201: YSSAFTDSKH INETQDQINE EEVMMINNNN YSSLEDVMLR TDFLQPDHEY ANYYSSGDFF INSDQNYV

Arabidopsis Description

AtMYB19MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LTJ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.