Factsheet for PGSC0003DMT400017709

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087130.2.1	Tomato	nucleus	93.8	94.6
Zm00001d023931_P001	Maize	nucleus	20.56	75.26
VIT_13s0064g00960.t01	Wine grape	nucleus	45.07	55.36
GSMUA_Achr8P31350_001	Banana	nucleus	40.56	51.61
GSMUA_Achr2P07780_001	Banana	nucleus	41.69	49.83
PGSC0003DMT400018995	Potato	nucleus	46.2	46.72
GSMUA_AchrUn_...	Banana	nucleus	37.18	46.64
TraesCS5A01G101000.1	Wheat	nucleus	41.13	37.53
TraesCS5D01G113300.1	Wheat	nucleus	41.13	37.53
TraesCS5B01G105900.1	Wheat	nucleus	40.0	36.41
EES17106	Sorghum	nucleus	41.41	35.17
PGSC0003DMT400087467	Potato	nucleus	25.07	32.36
HORVU5Hr1G027750.1	Barley	nucleus	40.56	31.03
PGSC0003DMT400069644	Potato	nucleus	27.04	30.48
PGSC0003DMT400046645	Potato	nucleus	26.48	28.92
PGSC0003DMT400037080	Potato	nucleus	21.97	28.06
PGSC0003DMT400018897	Potato	nucleus	24.51	27.19
PGSC0003DMT400047076	Potato	nucleus	30.7	25.59
PGSC0003DMT400040774	Potato	nucleus	27.89	24.32

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102583278	MapMan:15.5.2.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1A9C0	InterPro:Myb_dom	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400006868	PGSC:PGSC0003DMG400006868	EnsemblPlants:PGSC0003DMT400017709	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF915
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002959074	RefSeq:XP_006345502.2	SEG:seg

Description

MYB20 [Source:PGSC_GENE;Acc:PGSC0003DMG400006868]

Coordinates

chr1:-:65881546..65884345

Molecular Weight (calculated)

39537.1 Da

IEP (calculated)

5.999

GRAVY (calculated)

-0.706

Length

355 amino acids

Sequence
(BLAST)

001: MRKPEHNNTT MKEKEKVNKL GKLRKGLWSP EEDEKLMSYM LTNGQGCWSD IARNAGLQRC GKSCRLRWIN YLRPDLKRGA FSLQEEELIV HLHSILGNRW
101: SQIAARLPGR TDNEIKNFWN STIKKRLKNN NNNSNNSTPS PNTSDSSMGG IFPMQGHDVN VMAALCMDNS SSTTSGSSMQ AMVPRNHFNP FPQLDNTSYD
201: ISGLVEPVNL GQFGCSGGDG GFLDYGVVET YSMMGLGSDE FSIPSLEGVN NKSTTTMGEN NNSNVDFNSN NIVSGANDYD SIIEKKITNG NNNNNNQHLM
301: NMSGSSDQSL KVEDYMVGFG NHHHWHGESL RIGEFDWEGL LANVSSLPYL DFQVE

Best Arabidopsis Sequence Match ( AT3G08500.1 )
(BLAST)

001: MMMRKPDITT IRDKGKPNHA CGGNNNKPKL RKGLWSPDED EKLIRYMLTN GQGCWSDIAR NAGLLRCGKS CRLRWINYLR PDLKRGSFSP QEEDLIFHLH
101: SILGNRWSQI ATRLPGRTDN EIKNFWNSTL KKRLKNNSNN NTSSGSSPNN SNSNSLDPRD QHVDMGGNST SLMDDYHHDE NMMTVGNTMR MDSSSPFNVG
201: PMVNSVGLNQ LYDPLMISVP DNGYHQMGNT VNVFSVNGLG DYGNTILDPI SKRVSVEGDD WFIPPSENTN VIACSTSNNL NLQALDPCFN SKNLCHSESF
301: KVGNVLGIEN GSWEIENPKI GDWDLDGLID NNSSFPFLDF QVD

Arabidopsis Description

MYB83Transcription factor MYB83 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6U1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.