Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G236700.1 | Wheat | nucleus | 93.56 | 96.17 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 95.59 | 95.59 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 85.08 | 81.49 |
| Zm00001d017383_P001 | Maize | nucleus | 71.53 | 72.51 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 54.24 | 71.75 |
| EES07547 | Sorghum | nucleus | 72.2 | 69.84 |
| Zm00001d051267_P001 | Maize | nucleus | 65.08 | 69.06 |
| Solyc01g009650.1.1 | Tomato | nucleus | 20.68 | 67.03 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 60.0 | 64.13 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 58.64 | 61.57 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 57.29 | 59.72 |
| Bra013900.1-P | Field mustard | nucleus | 31.19 | 42.79 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 45.08 | 42.09 |
| KRH35334 | Soybean | nucleus | 38.31 | 41.85 |
| KRH09018 | Soybean | nucleus | 40.0 | 40.55 |
| KRH38485 | Soybean | nucleus | 39.32 | 39.86 |
| PGSC0003DMT400037080 | Potato | nucleus | 36.95 | 39.21 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 38.31 | 37.92 |
| Solyc03g025870.2.1 | Tomato | nucleus | 35.25 | 37.28 |
| CDY64708 | Canola | nucleus | 32.54 | 37.21 |
| Bra018027.1-P | Field mustard | nucleus | 32.54 | 37.21 |
| CDY32589 | Canola | nucleus | 31.53 | 37.05 |
| CDY50197 | Canola | nucleus | 30.85 | 36.4 |
| AT5G52260.1 | Thale cress | nucleus | 32.88 | 36.19 |
| CDY05881 | Canola | nucleus | 31.19 | 35.66 |
| Bra029129.1-P | Field mustard | nucleus | 32.2 | 35.58 |
| CDY38910 | Canola | nucleus | 32.2 | 35.58 |
| CDX89413 | Canola | nucleus | 32.54 | 35.56 |
| CDX94440 | Canola | nucleus | 30.85 | 35.41 |
| AT3G48920.1 | Thale cress | nucleus | 31.19 | 35.25 |
| CDX92718 | Canola | nucleus | 30.85 | 34.73 |
| AT4G25560.1 | Thale cress | nucleus | 33.22 | 34.63 |
| KRG91494 | Soybean | nucleus | 38.98 | 34.53 |
| TraesCS4D01G309700.1 | Wheat | nucleus | 23.05 | 30.91 |
| TraesCS3D01G255400.1 | Wheat | nucleus | 29.83 | 30.88 |
| TraesCS7D01G340300.1 | Wheat | nucleus | 29.49 | 30.31 |
| TraesCS1D01G371800.1 | Wheat | nucleus | 29.49 | 30.0 |
| TraesCS1D01G371700.1 | Wheat | nucleus | 29.49 | 29.69 |
| TraesCS3D01G251600.1 | Wheat | nucleus | 29.15 | 29.35 |
| TraesCS1D01G371500.1 | Wheat | nucleus | 29.15 | 28.86 |
| TraesCS1D01G371900.1 | Wheat | nucleus | 27.46 | 28.83 |
| TraesCS1D01G371400.1 | Wheat | nucleus | 28.81 | 28.05 |
| TraesCS3D01G094500.1 | Wheat | nucleus | 25.08 | 25.96 |
| TraesCS2D01G158300.1 | Wheat | nucleus | 24.41 | 25.26 |
| TraesCS2D01G158200.1 | Wheat | nucleus | 29.83 | 25.21 |
| TraesCS7D01G300000.1 | Wheat | nucleus | 29.15 | 25.07 |
| TraesCS2D01G234000.1 | Wheat | nucleus | 29.15 | 22.51 |
| TraesCS1D01G084400.1 | Wheat | nucleus | 31.53 | 21.68 |
| Bra019154.1-P | Field mustard | nucleus | 32.54 | 20.82 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 27.12 | 20.57 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G219300.1 | EnsemblPlantsGene:TraesCS6D01G219300 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF748 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:309341366..309343957
Molecular Weight (calculated)
31582.8 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.636
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKACDKPR PSYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR
101: TDNEVKNYWN SYLKKRVEGG KEAPGSPAPP AANSAAESDG SQSPSQGEVS TAQERAGRPS NSGSSEPPHE SSSADSSCLT VTEPPACRAH APVIPKVMFA
201: DWLNMDYIGG QVAAAAPGPE AAGVVGAGGG DHRQVMSQGS AQVDGPPGVE DPLHGGFGDN GTCWEFLEQF DSMDQMQAGG GFCDLLSMTE FFGLN
101: TDNEVKNYWN SYLKKRVEGG KEAPGSPAPP AANSAAESDG SQSPSQGEVS TAQERAGRPS NSGSSEPPHE SSSADSSCLT VTEPPACRAH APVIPKVMFA
201: DWLNMDYIGG QVAAAAPGPE AAGVVGAGGG DHRQVMSQGS AQVDGPPGVE DPLHGGFGDN GTCWEFLEQF DSMDQMQAGG GFCDLLSMTE FFGLN
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
Arabidopsis Description
AtMYB103MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.