Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G25560.1 | KRH14801 | AT2G32950.1 | 12827204 |
| AT4G25560.1 | KRH73341 | AT2G32950.1 | 12827204 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009650.1.1 | Tomato | nucleus | 24.81 | 73.63 |
| KRG91494 | Soybean | nucleus | 90.74 | 73.57 |
| KRH09018 | Soybean | nucleus | 69.26 | 64.26 |
| GSMUA_Achr4P25340_001 | Banana | nucleus | 32.59 | 61.97 |
| KRH38485 | Soybean | nucleus | 66.67 | 61.86 |
| PGSC0003DMT400037080 | Potato | nucleus | 50.74 | 49.28 |
| VIT_16s0050g00050.t01 | Wine grape | nucleus | 52.96 | 47.99 |
| Solyc03g025870.2.1 | Tomato | nucleus | 49.26 | 47.67 |
| Bra013900.1-P | Field mustard | nucleus | 34.81 | 43.72 |
| CDY32589 | Canola | nucleus | 37.41 | 40.24 |
| TraesCS2D01G367000.1 | Wheat | nucleus | 41.85 | 40.21 |
| CDY50197 | Canola | nucleus | 37.04 | 40.0 |
| AT3G48920.1 | Thale cress | nucleus | 38.52 | 39.85 |
| TraesCS2B01G387800.1 | Wheat | nucleus | 41.11 | 39.78 |
| CDX94440 | Canola | nucleus | 37.78 | 39.69 |
| AT5G52260.1 | Thale cress | nucleus | 39.26 | 39.55 |
| TraesCS6A01G236700.1 | Wheat | nucleus | 41.85 | 39.37 |
| TraesCS2A01G370400.1 | Wheat | nucleus | 41.11 | 39.22 |
| Os04t0532800-01 | Rice | nucleus | 39.63 | 39.19 |
| Bra029129.1-P | Field mustard | nucleus | 38.52 | 38.95 |
| CDY38910 | Canola | nucleus | 38.52 | 38.95 |
| TraesCS2B01G387300.1 | Wheat | nucleus | 39.26 | 38.69 |
| TraesCS6B01G265200.1 | Wheat | nucleus | 42.22 | 38.64 |
| TraesCS2A01G370300.1 | Wheat | nucleus | 39.63 | 38.63 |
| GSMUA_Achr4P11960_001 | Banana | nucleus | 35.19 | 38.62 |
| TraesCS2D01G366900.1 | Wheat | nucleus | 40.37 | 38.52 |
| TraesCS2D01G366800.1 | Wheat | nucleus | 39.26 | 38.41 |
| Bra018027.1-P | Field mustard | nucleus | 36.67 | 38.37 |
| CDY64708 | Canola | nucleus | 36.67 | 38.37 |
| CDY05881 | Canola | nucleus | 36.67 | 38.37 |
| TraesCS6D01G219300.1 | Wheat | nucleus | 41.85 | 38.31 |
| CDX92718 | Canola | nucleus | 37.04 | 38.17 |
| TraesCS2B01G387500.1 | Wheat | nucleus | 40.0 | 38.16 |
| GSMUA_Achr8P11340_001 | Banana | nucleus | 39.26 | 38.13 |
| TraesCS2B01G387700.1 | Wheat | nucleus | 38.52 | 37.96 |
| TraesCS2A01G370700.1 | Wheat | nucleus | 38.89 | 37.91 |
| CDX89413 | Canola | nucleus | 37.78 | 37.78 |
| GSMUA_Achr1P17480_001 | Banana | nucleus | 38.15 | 37.73 |
| Zm00001d017383_P001 | Maize | nucleus | 40.0 | 37.11 |
| AT4G25560.1 | Thale cress | nucleus | 38.89 | 37.1 |
| GSMUA_Achr4P29410_001 | Banana | nucleus | 38.15 | 36.92 |
| EES11177 | Sorghum | nucleus | 40.0 | 36.24 |
| HORVU6Hr1G060610.3 | Barley | nucleus | 41.11 | 36.04 |
| Zm00001d051267_P001 | Maize | nucleus | 37.04 | 35.97 |
| HORVU6Hr1G060600.2 | Barley | mitochondrion | 29.63 | 35.87 |
| HORVU2Hr1G091590.1 | Barley | nucleus | 40.0 | 35.53 |
| EES06150 | Sorghum | nucleus | 38.52 | 34.78 |
| GSMUA_Achr4P05410_001 | Banana | nucleus | 36.67 | 34.14 |
| EES07547 | Sorghum | nucleus | 38.52 | 34.1 |
| TraesCS6B01G053100.1 | Wheat | nucleus | 38.89 | 34.09 |
| HORVU6Hr1G007010.2 | Barley | nucleus | 39.26 | 33.87 |
| TraesCS6D01G043600.1 | Wheat | nucleus | 39.26 | 33.54 |
| GSMUA_Achr2P11450_001 | Banana | nucleus | 38.15 | 33.44 |
| Zm00001d014989_P001 | Maize | nucleus | 37.04 | 32.47 |
| TraesCS6A01G037700.1 | Wheat | nucleus | 38.89 | 29.58 |
| KRH20828 | Soybean | nucleus | 30.74 | 26.69 |
| KRH41236 | Soybean | nucleus | 31.48 | 26.48 |
| KRH77586 | Soybean | nucleus | 31.85 | 26.38 |
| KRH59965 | Soybean | nucleus | 31.11 | 26.25 |
| KRH47101 | Soybean | nucleus | 34.07 | 26.14 |
| KRH43663 | Soybean | nucleus | 31.48 | 25.99 |
| KRH13791 | Soybean | nucleus | 31.11 | 25.85 |
| KRH44125 | Soybean | nucleus | 33.33 | 25.79 |
| KRH10036 | Soybean | nucleus | 33.7 | 25.78 |
| KRH27485 | Soybean | nucleus | 30.0 | 25.71 |
| KRH23131 | Soybean | nucleus | 31.48 | 25.68 |
| KRG93751 | Soybean | nucleus | 31.85 | 25.6 |
| KRH27893 | Soybean | nucleus | 30.74 | 25.54 |
| KRH24713 | Soybean | nucleus | 31.48 | 25.3 |
| KRH10204 | Soybean | nucleus | 31.11 | 25.15 |
| KRH29717 | Soybean | nucleus | 31.48 | 25.0 |
| KRH18309 | Soybean | nucleus | 31.48 | 24.93 |
| KRH63612 | Soybean | nucleus | 32.96 | 24.79 |
| KRH54334 | Soybean | nucleus | 32.96 | 24.45 |
| KRH57123 | Soybean | nucleus | 32.22 | 23.51 |
| KRG90431 | Soybean | nucleus | 36.67 | 23.13 |
| KRH68350 | Soybean | nucleus | 35.56 | 22.97 |
| KRH03235 | Soybean | nucleus | 30.74 | 22.93 |
| KRH33726 | Soybean | nucleus | 35.93 | 22.61 |
| KRH68389 | Soybean | nucleus | 34.81 | 22.49 |
| KRG96660 | Soybean | nucleus | 35.56 | 22.12 |
| KRH69136 | Soybean | nucleus | 35.19 | 21.89 |
| Bra019154.1-P | Field mustard | nucleus | 37.04 | 21.69 |
| KRH33667 | Soybean | nucleus | 35.93 | 21.27 |
| KRG96619 | Soybean | plastid, vacuole | 35.56 | 19.39 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100790724 | MapMan:15.5.2.1 | EMBL:ACUP02006664 | EMBL:BT097734 | UniProt:C6TJ90 |
| EnsemblPlantsGene:GLYMA_10G236600 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | ProteinID:KRH35333.1 |
| EnsemblPlants:KRH35334 | ProteinID:KRH35334 | ProteinID:KRH35334.1 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF563 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001B165B4 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:46549220..46552230
Molecular Weight (calculated)
30792.5 Da
IEP (calculated)
9.100
GRAVY (calculated)
-0.729
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFQPMEKGK AKHKKGLWSP EEDNKLRNHI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN YLRPGLKRGK FSKQEEETIL TLHDMLGNKW SQISQHLPGR
101: TDNEIKNYWH SYLKKRVAKA KEMESHNQIK YASSSSDTID SSNSIQKLAT QGQQIYNFTK ESCQSSLPKL LFAEWLSLDH VNSANSVESL GLRNGFDHNS
201: TFQEAAIHDM SEVPFGGDYN RCVSNIPAPE MFNSQLKYAN QMVENGYIHC MPGFDLSSNF SMSNDAIMYI
101: TDNEIKNYWH SYLKKRVAKA KEMESHNQIK YASSSSDTID SSNSIQKLAT QGQQIYNFTK ESCQSSLPKL LFAEWLSLDH VNSANSVESL GLRNGFDHNS
201: TFQEAAIHDM SEVPFGGDYN RCVSNIPAPE MFNSQLKYAN QMVENGYIHC MPGFDLSSNF SMSNDAIMYI
001: MVFKSEKSNR EMKSKEKQRK GLWSPEEDEK LRSHVLKYGH GCWSTIPLQA GLQRNGKSCR LRWVNYLRPG LKKSLFTKQE ETILLSLHSM LGNKWSQISK
101: FLPGRTDNEI KNYWHSNLKK GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD HSLLMDQSPQ KSSYVQNLVL
201: PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE FCTSFSDNFL FDGLINELRP M
101: FLPGRTDNEI KNYWHSNLKK GVTLKQHETT KKHQTPLITN SLEALQSSTE RSSSSINVGE TSNAQTSSFS PNLVFSEWLD HSLLMDQSPQ KSSYVQNLVL
201: PEERGFIGPC GPRYLGNDSL PDFVPNSEFL LDDEISSEIE FCTSFSDNFL FDGLINELRP M
Arabidopsis Description
AtMYB45MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SMT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.