Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55316 | Canola | nucleus | 92.31 | 90.0 |
| Bra032610.1-P | Field mustard | mitochondrion, nucleus | 69.6 | 69.34 |
| CDX89982 | Canola | nucleus | 66.3 | 67.04 |
| CDY15232 | Canola | nucleus | 67.4 | 65.95 |
| AT1G02340.1 | Thale cress | nucleus | 69.6 | 65.07 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078H3Q2 | UniProt:A0A078H3Q2 | EnsemblPlants:CDY32456 | ProteinID:CDY32456 |
| ProteinID:CDY32456.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00052425001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEFB25 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA09g51400DBnaA09g51400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3Q2]
Coordinates
chrLK032295:-:92115..94059
Molecular Weight (calculated)
31413.5 Da
IEP (calculated)
8.610
GRAVY (calculated)
-0.607
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLEWTNDVE SLALKDQDIS VRARSGEDRI TNGLKWSDDY FYYDQADFHL QIVPEIRKEE ENSKKDLTLV VPDEHSETGD HHLHIKDYSD SSYNRRFLRN
101: KHAKPKRRRV QILSDDESGD FSRKVPLVIR KSSKRRIRDD MMSNKMRTLQ QLVPNCHKTD KVSVLDKTIE YMKNLQLQLQ VMSIMGMNPY IPQATLNFGM
201: HNHLLRAMVI AHGLNPAKQT TLSPLIAGSN WPSPPFSHLS FPHSSNQSLF PTPASSPQCL CGLVPCFPSD FFF
101: KHAKPKRRRV QILSDDESGD FSRKVPLVIR KSSKRRIRDD MMSNKMRTLQ QLVPNCHKTD KVSVLDKTIE YMKNLQLQLQ VMSIMGMNPY IPQATLNFGM
201: HNHLLRAMVI AHGLNPAKQT TLSPLIAGSN WPSPPFSHLS FPHSSNQSLF PTPASSPQCL CGLVPCFPSD FFF
001: MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD HDQTDNYLQI VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL
Arabidopsis Description
HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.