Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15232 | Canola | nucleus | 95.19 | 92.11 |
| CDY32456 | Canola | nucleus | 67.04 | 66.3 |
| CDY55316 | Canola | nucleus | 67.41 | 65.0 |
| AT1G02340.1 | Thale cress | nucleus | 67.04 | 61.99 |
Protein Annotations
| EnsemblPlants:CDX89982 | EnsemblPlantsGene:GSBRNA2T00150476001 | Gene3D:4.10.280.10 | GO:A0A078DM49 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDX89982 | ProteinID:CDX89982.1 |
| SEG:seg | SUPFAM:SSF47459 | UniParc:UPI0004EED0E4 | MapMan:15.5.32 | : | : |
Description
BnaA10g01000D
Coordinates
chrLK031861:+:1069517..1071976
Molecular Weight (calculated)
30604.2 Da
IEP (calculated)
6.284
GRAVY (calculated)
-0.581
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGWNNDVE SLAVKDQGIS ERARSDKERL ITGFKSSYGY VDHDQTDIQF QTVPEIHREE EISEKDLTLA VPDEHSETGD HHDHQTYDFS DNQNYLRNKH
101: VKPKRSRIEI FSDDESEGFT REVPTVTRKG FKGRRNDMLS NKMRKLQKLL PNCHKEDTVS VLDKAIEYMK DLQLQLQVMS IMGMNPYFAQ ATLNFGMHNH
201: LVTAMAIAQG INLVNQTTSS PLIPASNSLL PPFSNLLIPH TSNQSLFPTT ALPASSTQCL CGLVPFPKFP
101: VKPKRSRIEI FSDDESEGFT REVPTVTRKG FKGRRNDMLS NKMRKLQKLL PNCHKEDTVS VLDKAIEYMK DLQLQLQVMS IMGMNPYFAQ ATLNFGMHNH
201: LVTAMAIAQG INLVNQTTSS PLIPASNSLL PPFSNLLIPH TSNQSLFPTT ALPASSTQCL CGLVPFPKFP
001: MELGWRNDVG SLAVKDQGMM SERARSDEDR LINGLKWGYG YFDHDQTDNY LQIVPEIHKE VENAKEDLLV VVPDEHSETD DHHHIKDFSE RSDHRFYLRN
101: KHENPKKRRI QVLSSDDESE EFTREVPSVT RKGSKRRRRD EKMSNKMRKL QQLVPNCHKT DKVSVLDKTI EYMKNLQLQL QMMSTVGVNP YFLPATLGFG
201: MHNHMLTAMA SAHGLNPANH MMPSPLIPAL NWPLPPFTNI SFPHSSSQSL FLTTSSPASS PQSLHGLVPY FPSFLDFSSH AMRRL
101: KHENPKKRRI QVLSSDDESE EFTREVPSVT RKGSKRRRRD EKMSNKMRKL QQLVPNCHKT DKVSVLDKTI EYMKNLQLQL QMMSTVGVNP YFLPATLGFG
201: MHNHMLTAMA SAHGLNPANH MMPSPLIPAL NWPLPPFTNI SFPHSSSQSL FLTTSSPASS PQSLHGLVPY FPSFLDFSSH AMRRL
Arabidopsis Description
HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.