Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55316 | Canola | nucleus | 66.78 | 69.64 |
| CDY32456 | Canola | nucleus | 65.07 | 69.6 |
| CDX89982 | Canola | nucleus | 61.99 | 67.04 |
| CDY15232 | Canola | nucleus | 63.01 | 65.95 |
| Bra033315.1-P | Field mustard | nucleus | 50.0 | 62.39 |
| Bra032610.1-P | Field mustard | mitochondrion, nucleus | 48.97 | 52.19 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:839300 | ProteinID:AAG00886.1 | ProteinID:AEE27418.1 | EMBL:AF288287 |
| EMBL:AF323182 | EMBL:AF324245 | EMBL:AK117248 | ProteinID:ANM61075.1 | ArrayExpress:AT1G02340 | EnsemblPlantsGene:AT1G02340 |
| RefSeq:AT1G02340 | TAIR:AT1G02340 | RefSeq:AT1G02340-TAIR-G | EnsemblPlants:AT1G02340.1 | TAIR:AT1G02340.1 | Unigene:At.24795 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 |
| GO:GO:0009642 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009785 | GO:GO:0009987 | GO:GO:0010017 |
| GO:GO:0010218 | GO:GO:0046983 | Symbol:HFR1 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_001323315.1 | RefSeq:NP_563650.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009001 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF284 | UniProt:Q9FE22 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000012C6AF | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
Coordinates
chr1:-:465616..467880
Molecular Weight (calculated)
33616.9 Da
IEP (calculated)
7.584
GRAVY (calculated)
-0.708
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNQAFMEL GWRNDVGSLA VKDQGMMSER ARSDEDRLIN GLKWGYGYFD HDQTDNYLQI VPEIHKEVEN AKEDLLVVVP DEHSETDDHH HIKDFSERSD
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL
101: HRFYLRNKHE NPKKRRIQVL SSDDESEEFT REVPSVTRKG SKRRRRDEKM SNKMRKLQQL VPNCHKTDKV SVLDKTIEYM KNLQLQLQMM STVGVNPYFL
201: PATLGFGMHN HMLTAMASAH GLNPANHMMP SPLIPALNWP LPPFTNISFP HSSSQSLFLT TSSPASSPQS LHGLVPYFPS FLDFSSHAMR RL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.