Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35720.1 | CDX89982 | AT1G02340.1 | 19808946 |
| AT2G35720.1 | CDY15232 | AT1G02340.1 | 19808946 |
| AT2G35720.1 | CDY32456 | AT1G02340.1 | 19808946 |
| AT2G35720.1 | CDY55316 | AT1G02340.1 | 19808946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40444 | Canola | nucleus | 98.33 | 98.33 |
| AT2G35720.1 | Thale cress | cytosol | 85.0 | 85.32 |
| PGSC0003DMT400012260 | Potato | plastid | 32.96 | 66.92 |
| Solyc08g078660.2.1 | Tomato | nucleus | 66.11 | 66.11 |
| VIT_02s0154g00550.t01 | Wine grape | cytosol | 65.37 | 65.74 |
| KRH77367 | Soybean | cytosol | 60.93 | 60.93 |
| KRH28073 | Soybean | cytosol | 57.96 | 59.51 |
| EER91398 | Sorghum | cytosol | 58.33 | 58.33 |
| Os10t0507800-02 | Rice | cytosol | 57.78 | 57.78 |
| Zm00001d032505_P002 | Maize | plasma membrane | 57.78 | 57.78 |
| TraesCS1B01G204300.1 | Wheat | cytosol | 56.3 | 56.3 |
| TraesCS1A01G175900.1 | Wheat | cytosol | 56.11 | 56.11 |
| TraesCS1D01G162900.1 | Wheat | cytosol | 55.74 | 55.74 |
| HORVU1Hr1G046670.2 | Barley | cytosol | 55.19 | 55.19 |
| GSMUA_Achr8P11100_001 | Banana | cytosol | 52.22 | 51.74 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:35.1 | GO:A0A078JCI1 | UniProt:A0A078JCI1 | EnsemblPlants:CDY65318 | ProteinID:CDY65318 |
| ProteinID:CDY65318.1 | ncoils:Coil | InterPro:DnaJ-like_C11_C | InterPro:DnaJ_domain | InterPro:DnaJ_domain_CS | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00045595001 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf |
| PFAM:PF00226 | PFAM:PF11875 | PRINTS:PR00625 | ScanProsite:PS00636 | PFscan:PS50076 | PANTHER:PTHR44914 |
| SMART:SM00271 | SUPFAM:SSF46565 | TMHMM:TMhelix | UniParc:UPI0004EEACCE | : | : |
Description
BnaC04g56520DBnaC04g56520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JCI1]
Coordinates
chrLK034729:-:22426..25535
Molecular Weight (calculated)
59505.6 Da
IEP (calculated)
9.431
GRAVY (calculated)
-0.333
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDEAAAART GPQNRELYAL LNLSPEASDE EIRKAYRQWA QVYHPDKSPS PLMKEVAEEN FKRICEAYEI LSDETKRLIY DLYGMEGLAS GLELGPRLSK
101: AEEIKEELQR IKRREEEAKK MAHFMPTGSI VFNLSMPSFL EGDGIMRGMV MASQVQSQLS KDDAVAIAGN LAANQRSGGG IGTVILRRQL SPVSSIEFVA
201: STGLQSLIGM QTTRQLSIHS TATINISKSF SDGSINLTNT WTRQLSETSS GNIELALGMR SGITVGWKKR DENVSAGGDL KIETGGLGAS ARYTRKLSSK
301: SHGRIAARIG SNALEIEVGG GRKISEFSTV RMMYTIGLKG VFWKLELHRG GQKLIVPVLL SAYISPVFAT GAFIVPTSLY FLLKKFVVKP YMQKREKRKA
401: LENTEKTYGK VREARASAEK AQQLLQNVAT RKKNRQAETG GLIVTKALYG DAKAIEKRHE HMEEEVDSGV IDVTVPMNFL VSDSGELKLH EGVKKSGIMG
501: FCDPCPDQPK QLYVAYTYNS RTFEAIVGDF EELVIPQAGQ
101: AEEIKEELQR IKRREEEAKK MAHFMPTGSI VFNLSMPSFL EGDGIMRGMV MASQVQSQLS KDDAVAIAGN LAANQRSGGG IGTVILRRQL SPVSSIEFVA
201: STGLQSLIGM QTTRQLSIHS TATINISKSF SDGSINLTNT WTRQLSETSS GNIELALGMR SGITVGWKKR DENVSAGGDL KIETGGLGAS ARYTRKLSSK
301: SHGRIAARIG SNALEIEVGG GRKISEFSTV RMMYTIGLKG VFWKLELHRG GQKLIVPVLL SAYISPVFAT GAFIVPTSLY FLLKKFVVKP YMQKREKRKA
401: LENTEKTYGK VREARASAEK AQQLLQNVAT RKKNRQAETG GLIVTKALYG DAKAIEKRHE HMEEEVDSGV IDVTVPMNFL VSDSGELKLH EGVKKSGIMG
501: FCDPCPDQPK QLYVAYTYNS RTFEAIVGDF EELVIPQAGQ
001: MMGQEAAPTG PPNRELYALL NLSPEASDEE IRKAYRQWAQ VYHPDKIQSP QMKEVATENF QRICEAYEIL SDETKRLIYD LYGMEGLNSG LELGPRLSKA
101: DEIKEELERI KRRNEEAKKM AHFQPTGSIL FNLSVPHFLV GDGIMRGMVM ASQVQSQLSK DDAIAIGGNL AANEKSGGGV ATAILRRQIS PVSSIEFVAS
201: TGLQSLIGVQ TTRQLTIHST ATINISKSLS DGSINLTNTW TRQLSETSSG NIELALGMRS AITVGWKKRD ENVSAAGDFK IESGGLGASA RYTRKLSSKS
301: HGRIVGRIGS NALEIELGGG RQISEFSTVR MMYTVGLKGI FWKVELHRGS QKLIVPILLS AHLAPVFATG AFIVPTSLYF LLKKFVVKPY LLKREKQKAL
401: ENMEKTWGQV GEARARAEKA QQLLQTVATR KKNRQVETDG LIVTKALYGD PKAIERRNEG VEGLDSGVID VTVPMNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGQPKQL YIAYTYHSQP FEVIVGDYEE LSIPQEGQ
101: DEIKEELERI KRRNEEAKKM AHFQPTGSIL FNLSVPHFLV GDGIMRGMVM ASQVQSQLSK DDAIAIGGNL AANEKSGGGV ATAILRRQIS PVSSIEFVAS
201: TGLQSLIGVQ TTRQLTIHST ATINISKSLS DGSINLTNTW TRQLSETSSG NIELALGMRS AITVGWKKRD ENVSAAGDFK IESGGLGASA RYTRKLSSKS
301: HGRIVGRIGS NALEIELGGG RQISEFSTVR MMYTVGLKGI FWKVELHRGS QKLIVPILLS AHLAPVFATG AFIVPTSLYF LLKKFVVKPY LLKREKQKAL
401: ENMEKTWGQV GEARARAEKA QQLLQTVATR KKNRQVETDG LIVTKALYGD PKAIERRNEG VEGLDSGVID VTVPMNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGQPKQL YIAYTYHSQP FEVIVGDYEE LSIPQEGQ
Arabidopsis Description
ATJ13Chaperone protein dnaJ 13 [Source:UniProtKB/Swiss-Prot;Acc:Q39079]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.