CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032505_P002	Maize	plasma membrane	93.33	93.33
Os10t0507800-02	Rice	cytosol	85.37	85.37
TraesCS1B01G204300.1	Wheat	cytosol	82.96	82.96
HORVU1Hr1G046670.2	Barley	cytosol	82.59	82.59
TraesCS1D01G162900.1	Wheat	cytosol	82.59	82.59
TraesCS1A01G175900.1	Wheat	cytosol	82.41	82.41
VIT_02s0154g00550.t01	Wine grape	cytosol	66.67	67.04
Solyc08g078660.2.1	Tomato	nucleus	66.11	66.11
PGSC0003DMT400012260	Potato	plastid	30.93	62.78
KRH77367	Soybean	cytosol	61.67	61.67
KRH28073	Soybean	cytosol	60.0	61.6
AT2G35720.1	Thale cress	cytosol	60.37	60.59
GSMUA_Achr8P11100_001	Banana	cytosol	59.63	59.08
CDY40444	Canola	nucleus	59.07	59.07
Bra017300.1-P	Field mustard	nucleus	58.89	58.56
CDY65318	Canola	nucleus	58.33	58.33

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.1	EntrezGene:8065187	UniProt:C5WWB8	ncoils:Coil	InterPro:DnaJ-like_C11_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlants:EER91398	ProteinID:EER91398	ProteinID:EER91398.1	GO:GO:0000003
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150
GO:GO:0009536	GO:GO:0009628	GO:GO:0009791	GO:GO:0010228	GO:GO:0055122	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF00226	PFAM:PF11875	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PANTHER:PTHR44914	SMART:SM00271	EnsemblPlantsGene:SORBI_3001G199500	SUPFAM:SSF46565	UniParc:UPI0001A8241E
RefSeq:XP_002464400.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:18056246..18064194

Molecular Weight (calculated)

59976.8 Da

IEP (calculated)

8.974

GRAVY (calculated)

-0.346

Length

540 amino acids

Sequence
(BLAST)

001: MASAPEPEDG RELYALLHLS PDASGEEIRR AYRQFAQIYH PDKYQDTQMK EVATENFQRI RDAYEILSDE NKRQIYDIYG MEGLNSGLEL GPKLTKPEEI
101: KEQLERLRRR KEEEKLFTHA LPNGSIIANF SVPHYLNGGG IMRGMAMSSE VELPVSKQNT VVVGGNLAVN GSAGSGAAST VLRHQLSPVS SIEFMATAGL
201: RSVIGTQMSR QISPHSTATS GLAVSLRDGS INLSNAWTRQ LSDNAVGNIQ LVLGDESSIS VGWQKKDEKS TATGEVKFGT NFFGASAHYT HRFSSKSHAR
301: VAGRVGSTAL DFEIGGGRRI SEFSTIRMMY NIGIQGVSWR FELHRAGQKL IIPVLLSADL NALFVTSAFA IPSTLYFLLQ TYVVKPYYLK REKQKTLEKM
401: EGLSAQLTEA RKAAEKAQKL LEPVSNRKKN RQLENNGLVI TKALYGSCKK IKESSELNEI HSDMASQVFD VTIPLNFLVT DAGQLKLHDG IKKSGIMGFY
501: DPCPGEPKLL LVEYTFHGRK YKVMVDDYEA LLIPQDIHQF

Best Arabidopsis Sequence Match ( AT2G35720.1 )
(BLAST)

001: MMGQEAAPTG PPNRELYALL NLSPEASDEE IRKAYRQWAQ VYHPDKIQSP QMKEVATENF QRICEAYEIL SDETKRLIYD LYGMEGLNSG LELGPRLSKA
101: DEIKEELERI KRRNEEAKKM AHFQPTGSIL FNLSVPHFLV GDGIMRGMVM ASQVQSQLSK DDAIAIGGNL AANEKSGGGV ATAILRRQIS PVSSIEFVAS
201: TGLQSLIGVQ TTRQLTIHST ATINISKSLS DGSINLTNTW TRQLSETSSG NIELALGMRS AITVGWKKRD ENVSAAGDFK IESGGLGASA RYTRKLSSKS
301: HGRIVGRIGS NALEIELGGG RQISEFSTVR MMYTVGLKGI FWKVELHRGS QKLIVPILLS AHLAPVFATG AFIVPTSLYF LLKKFVVKPY LLKREKQKAL
401: ENMEKTWGQV GEARARAEKA QQLLQTVATR KKNRQVETDG LIVTKALYGD PKAIERRNEG VEGLDSGVID VTVPMNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGQPKQL YIAYTYHSQP FEVIVGDYEE LSIPQEGQ

Arabidopsis Description

ATJ13Chaperone protein dnaJ 13 [Source:UniProtKB/Swiss-Prot;Acc:Q39079]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.