Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • endoplasmic reticulum 1
  • plastid 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400012260 Potato plastid 46.48 94.36
VIT_02s0154g00550.t01 Wine grape cytosol 75.19 75.61
KRH77367 Soybean cytosol 69.26 69.26
KRH28073 Soybean cytosol 67.04 68.82
AT2G35720.1 Thale cress cytosol 66.67 66.91
CDY65318 Canola nucleus 66.11 66.11
EER91398 Sorghum cytosol 66.11 66.11
TraesCS1B01G204300.1 Wheat cytosol 66.11 66.11
CDY40444 Canola nucleus 65.93 65.93
TraesCS1A01G175900.1 Wheat cytosol 65.93 65.93
Bra017300.1-P Field mustard nucleus 65.93 65.56
HORVU1Hr1G046670.2 Barley cytosol 65.56 65.56
Os10t0507800-02 Rice cytosol 65.56 65.56
TraesCS1D01G162900.1 Wheat cytosol 65.56 65.56
Zm00001d032505_P002 Maize plasma membrane 64.44 64.44
GSMUA_Achr8P11100_001 Banana cytosol 59.07 58.53
Protein Annotations
Gene3D:1.10.287.110MapMan:35.1ncoils:CoilInterPro:DnaJ-like_C11_CInterPro:DnaJ_domainInterPro:DnaJ_domain_CS
GO:GO:0000003GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0007275
GO:GO:0008150GO:GO:0009536GO:GO:0009628GO:GO:0009791GO:GO:0010228GO:GO:0055122
InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfUniProt:K4CNM5PFAM:PF00226PFAM:PF11875
PRINTS:PR00625ScanProsite:PS00636PFscan:PS50076PANTHER:PTHR44914SMART:SM00271SUPFAM:SSF46565
EnsemblPlantsGene:Solyc08g078660.2EnsemblPlants:Solyc08g078660.2.1UniParc:UPI000276ACE1SEG:seg::
Description
Chaperone protein dnaJ 13 [Source:Projected from Arabidopsis thaliana (AT2G35720) UniProtKB/Swiss-Prot;Acc:Q39079]
Coordinates
chr8:+:62425348..62439081
Molecular Weight (calculated)
59882.0 Da
IEP (calculated)
9.376
GRAVY (calculated)
-0.350
Length
540 amino acids
Sequence
(BLAST)
001: MKEEETGAQN RELYALLHIS PEASDEEIRK AYRQWAQIYH PDKYQALEMK EIATENFQRI CEAYEILSDE TKRQIYDIYG MEGINSGLEL GTKLNKAEEI
101: KEELERLRRQ KELQKVAAHL RPSGSIMANL SLPQFLEGDG IMKGMAMASE VQSQISKNNA VAIGGNLAVN GNAGGGAASV VFRHQMSSVS SIEFMGSMGL
201: RALVGVQTTR HISVHSTATM GLAMSLRDGS VNLSNTWTRQ LSDTAHGNIH LSLGPESSIA VGWQRKEQKR SASGEIKLGT GSFGATANYT HRFSTKSHGR
301: IGARIGSTAL ELELGGGRKV SEFSTIRMLY SIGIQGIFWK FELHRGGQKL IVPVLLSRHL NPIFATGAFL VPTSLYFVLK RFVVKPFYLQ REKQKASENM
401: DKTLGQVREA RTAAKKAQQL LQNVANRKRS RQLEAGGLVV TKALYGSHKA LKNRNQIEEV KDEVASQIID VTLPLNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGEPKQL YVEYTFDGNN FEVIVDDLDE LLIPQESHRI
Best Arabidopsis Sequence Match ( AT2G35720.1 )
(BLAST)
001: MMGQEAAPTG PPNRELYALL NLSPEASDEE IRKAYRQWAQ VYHPDKIQSP QMKEVATENF QRICEAYEIL SDETKRLIYD LYGMEGLNSG LELGPRLSKA
101: DEIKEELERI KRRNEEAKKM AHFQPTGSIL FNLSVPHFLV GDGIMRGMVM ASQVQSQLSK DDAIAIGGNL AANEKSGGGV ATAILRRQIS PVSSIEFVAS
201: TGLQSLIGVQ TTRQLTIHST ATINISKSLS DGSINLTNTW TRQLSETSSG NIELALGMRS AITVGWKKRD ENVSAAGDFK IESGGLGASA RYTRKLSSKS
301: HGRIVGRIGS NALEIELGGG RQISEFSTVR MMYTVGLKGI FWKVELHRGS QKLIVPILLS AHLAPVFATG AFIVPTSLYF LLKKFVVKPY LLKREKQKAL
401: ENMEKTWGQV GEARARAEKA QQLLQTVATR KKNRQVETDG LIVTKALYGD PKAIERRNEG VEGLDSGVID VTVPMNFLVS DSGQLKLHEG VKKSGIMGFC
501: DPCPGQPKQL YIAYTYHSQP FEVIVGDYEE LSIPQEGQ
Arabidopsis Description
ATJ13Chaperone protein dnaJ 13 [Source:UniProtKB/Swiss-Prot;Acc:Q39079]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.