Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38211 | Canola | nucleus | 98.64 | 98.64 |
| Bra027771.1-P | Field mustard | nucleus | 94.85 | 95.63 |
| CDY25547 | Canola | nucleus | 86.18 | 85.95 |
| AT1G63910.1 | Thale cress | nucleus | 85.37 | 85.14 |
| CDY34386 | Canola | extracellular | 63.96 | 78.67 |
| CDY05331 | Canola | nucleus | 23.85 | 66.67 |
| CDY05516 | Canola | nucleus | 23.58 | 65.91 |
| VIT_02s0025g00320.t01 | Wine grape | nucleus | 48.78 | 59.21 |
| KRH27893 | Soybean | nucleus | 51.49 | 58.46 |
| KRH77586 | Soybean | nucleus | 51.49 | 58.28 |
| KRH41236 | Soybean | nucleus | 50.68 | 58.26 |
| KRH59965 | Soybean | nucleus | 48.51 | 55.94 |
| GSMUA_Achr10P... | Banana | nucleus | 41.46 | 51.52 |
| GSMUA_Achr6P36930_001 | Banana | nucleus | 41.73 | 49.52 |
| Solyc08g081500.1.1 | Tomato | nucleus | 44.17 | 49.24 |
| CDX93504 | Canola | nucleus | 27.37 | 34.35 |
| CDY50901 | Canola | nucleus | 27.64 | 34.11 |
| CDY42171 | Canola | nucleus | 26.02 | 32.65 |
| CDY42172 | Canola | nucleus | 26.02 | 32.65 |
| CDY08409 | Canola | nucleus | 26.02 | 32.65 |
| CDY43404 | Canola | nucleus | 25.75 | 32.31 |
| CDY22635 | Canola | nucleus | 26.56 | 31.72 |
| CDY06359 | Canola | nucleus | 26.29 | 31.49 |
| CDY39077 | Canola | nucleus | 29.81 | 30.81 |
| CDY55231 | Canola | nucleus | 27.37 | 30.79 |
| CDX91158 | Canola | nucleus | 23.04 | 30.58 |
| CDX85684 | Canola | nucleus | 23.04 | 30.47 |
| CDY53970 | Canola | nucleus | 23.04 | 30.36 |
| CDX78493 | Canola | nucleus | 23.04 | 30.36 |
| CDY37496 | Canola | nucleus | 29.27 | 30.25 |
| CDY32188 | Canola | nucleus | 27.37 | 30.06 |
| CDY31082 | Canola | nucleus | 27.91 | 29.77 |
| CDY58217 | Canola | nucleus | 27.1 | 29.76 |
| CDY50197 | Canola | nucleus | 20.05 | 29.6 |
| CDX94440 | Canola | nucleus | 20.6 | 29.57 |
| CDX97526 | Canola | nucleus | 27.1 | 29.5 |
| CDY32589 | Canola | nucleus | 20.05 | 29.48 |
| CDY07124 | Canola | nucleus | 26.83 | 29.46 |
| CDX87038 | Canola | nucleus | 26.29 | 28.7 |
| CDY64708 | Canola | nucleus | 20.05 | 28.68 |
| CDX92718 | Canola | nucleus | 20.33 | 28.63 |
| CDY68301 | Canola | nucleus | 25.75 | 28.36 |
| CDX89413 | Canola | nucleus | 20.33 | 27.78 |
| CDY38910 | Canola | nucleus | 20.05 | 27.72 |
| CDY05881 | Canola | nucleus | 19.24 | 27.52 |
| CDX88230 | Canola | nucleus | 26.02 | 26.97 |
| CDX80576 | Canola | nucleus | 26.02 | 26.89 |
| CDY27999 | Canola | nucleus | 24.39 | 26.87 |
| CDY35982 | Canola | nucleus | 24.39 | 26.87 |
| CDX74013 | Canola | nucleus | 24.39 | 26.47 |
| CDY70536 | Canola | nucleus | 24.12 | 25.95 |
| CDX97209 | Canola | nucleus | 23.31 | 24.29 |
| CDY70602 | Canola | nucleus, plastid | 2.44 | 5.77 |
| CDY70493 | Canola | cytosol, plastid | 1.9 | 5.3 |
| CDY05517 | Canola | plastid | 1.9 | 4.09 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078F990 | UniProt:A0A078F990 | EnsemblPlants:CDY08343 | ProteinID:CDY08343 |
| ProteinID:CDY08343.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00000047001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF451 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EB0ECD | SEG:seg |
Description
BnaC09g12530DBnaC09g12530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F990]
Coordinates
chrLK031985:-:330774..332679
Molecular Weight (calculated)
41906.8 Da
IEP (calculated)
6.624
GRAVY (calculated)
-0.699
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYNRHQPSI TTVTMNVDAT STGTAVPSTT TNTSTIDNLH FDSFMNSPNQ LNFTNDQEAN TKIQETLFSH KTPLFMVDQT
201: LPVLEGMFSQ NIITNNNKKN NYHDTRRGGR GGVLEQSFLT NNTEEWDMNL SQQEPFQVPT MVSHLFNNST SSNTETVISY NLPALVEGNV DNISPLGNSA
301: QDGDMASTIE CLKKQELSYD QWIDSQQCSN FFLWDNLNIN VEGSSLVGNQ DPSMTLESSA LSSSFPSSF
101: DNEIKNYWNS WIKKKIRKPH HHYNRHQPSI TTVTMNVDAT STGTAVPSTT TNTSTIDNLH FDSFMNSPNQ LNFTNDQEAN TKIQETLFSH KTPLFMVDQT
201: LPVLEGMFSQ NIITNNNKKN NYHDTRRGGR GGVLEQSFLT NNTEEWDMNL SQQEPFQVPT MVSHLFNNST SSNTETVISY NLPALVEGNV DNISPLGNSA
301: QDGDMASTIE CLKKQELSYD QWIDSQQCSN FFLWDNLNIN VEGSSLVGNQ DPSMTLESSA LSSSFPSSF
001: MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY LRPDIRRGRF SPEEEKLIIS LHGVVGNRWA HIASHLPGRT
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
101: DNEIKNYWNS WIKKKIRKPH HHYSRHQPSV TTVTLNADTT SIATTIEAST TTTSTIDNLH FDGFTDSPNQ LNFTNDQETN IKIQETFFSH KPPLFMVDTT
201: LPILEGMFSE NIITNNNKNN DHDDTQRGGR ENVCEQAFLT TNTEEWDMNL RQQEPFQVPT LASHVFNNSS NSNIDTVISY NLPALIEGNV DNIVHNENSN
301: VQDGEMASTF ECLKRQELSY DQWDDSQQCS NFFFWDNLNI NVEGSSLVGN QDPSMNLGSS ALSSSFPSSF
Arabidopsis Description
AtMYB103MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SRB0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.