Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85684 | Canola | nucleus | 95.32 | 94.98 |
| CDY53970 | Canola | nucleus | 85.61 | 85.0 |
| AT5G12870.1 | Thale cress | nucleus | 84.89 | 84.29 |
| CDX78493 | Canola | nucleus | 84.89 | 84.29 |
| Zm00001d023931_P001 | Maize | nucleus | 24.46 | 70.1 |
| CDX97209 | Canola | nucleus | 85.61 | 67.23 |
| CDY05516 | Canola | nucleus | 30.94 | 65.15 |
| CDY05331 | Canola | nucleus | 30.58 | 64.39 |
| CDY35982 | Canola | nucleus | 43.53 | 36.12 |
| CDX74013 | Canola | nucleus | 43.88 | 35.88 |
| CDY27999 | Canola | nucleus | 43.17 | 35.82 |
| CDY70536 | Canola | nucleus | 43.53 | 35.28 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 43.17 | 30.85 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 43.17 | 30.77 |
| CDY50901 | Canola | nucleus | 33.09 | 30.77 |
| CDX93504 | Canola | nucleus | 32.37 | 30.61 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 42.81 | 30.59 |
| CDY32589 | Canola | nucleus | 26.98 | 29.88 |
| CDY42172 | Canola | nucleus | 31.3 | 29.59 |
| CDY08409 | Canola | nucleus | 31.3 | 29.59 |
| CDY42171 | Canola | nucleus | 31.3 | 29.59 |
| CDY06359 | Canola | nucleus | 32.73 | 29.55 |
| CDY22635 | Canola | nucleus | 32.73 | 29.45 |
| EES17106 | Sorghum | nucleus | 44.24 | 29.43 |
| CDX94440 | Canola | nucleus | 26.62 | 28.79 |
| CDY38910 | Canola | nucleus | 27.34 | 28.46 |
| CDY50197 | Canola | nucleus | 25.54 | 28.4 |
| CDY43404 | Canola | nucleus | 29.86 | 28.23 |
| CDY32188 | Canola | nucleus | 33.81 | 27.98 |
| CDY64708 | Canola | nucleus | 25.9 | 27.91 |
| CDY68301 | Canola | nucleus | 33.45 | 27.76 |
| CDX89413 | Canola | nucleus | 26.62 | 27.41 |
| CDX87038 | Canola | nucleus | 33.09 | 27.22 |
| CDY05881 | Canola | nucleus | 25.18 | 27.13 |
| CDX92718 | Canola | nucleus | 25.54 | 27.1 |
| CDY31082 | Canola | nucleus | 33.45 | 26.88 |
| CDY55231 | Canola | nucleus | 30.58 | 25.91 |
| CDX88230 | Canola | nucleus | 32.73 | 25.56 |
| CDX80576 | Canola | nucleus | 32.73 | 25.49 |
| CDY39077 | Canola | nucleus | 32.73 | 25.49 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 42.45 | 25.43 |
| CDY07124 | Canola | nucleus | 30.58 | 25.3 |
| CDY58217 | Canola | nucleus | 30.58 | 25.3 |
| CDY37496 | Canola | nucleus | 32.01 | 24.93 |
| CDX97526 | Canola | nucleus | 29.5 | 24.19 |
| CDY25547 | Canola | nucleus | 30.94 | 23.24 |
| CDY08343 | Canola | nucleus | 30.58 | 23.04 |
| CDY38211 | Canola | nucleus | 30.58 | 23.04 |
| CDY34386 | Canola | extracellular | 11.15 | 10.33 |
| CDY70493 | Canola | cytosol, plastid | 2.88 | 6.06 |
| CDY70602 | Canola | nucleus, plastid | 2.52 | 4.49 |
| CDY05517 | Canola | plastid | 1.44 | 2.34 |
Protein Annotations
| EnsemblPlants:CDX91158 | EnsemblPlantsGene:GSBRNA2T00151954001 | Gene3D:1.10.10.60 | GO:A0A078DVC5 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF593 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDX91158 | ProteinID:CDX91158.1 |
| SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EDFF14 | MapMan:15.5.2.1 | : |
Description
BnaC02g04390D
Coordinates
chrLK031865:+:1099258..1101576
Molecular Weight (calculated)
31595.1 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.692
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPEVANVV THQVKKMKKG LWSPEEDSKL MQYMITNGQG CWSDVAKNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIIRFHSIL GNRWSQIAAR
101: LPGRTDNEIK NFWNSTIKKR LKKMSDTSNL VNNSSCSPNA SDSSSNSTTS LEFKDIIGSF MSFQEQGFVN PSLTNMPTNN NPFPAPQLLS HPYNDDFTPY
201: IDGFCGVNTG VQGELYFPPL ECEGDRYKAD ITNHLDDDMN TNGAGNVPEG VRMEEYWDLD QLMNTEAPSF YFNFKQSI
101: LPGRTDNEIK NFWNSTIKKR LKKMSDTSNL VNNSSCSPNA SDSSSNSTTS LEFKDIIGSF MSFQEQGFVN PSLTNMPTNN NPFPAPQLLS HPYNDDFTPY
201: IDGFCGVNTG VQGELYFPPL ECEGDRYKAD ITNHLDDDMN TNGAGNVPEG VRMEEYWDLD QLMNTEAPSF YFNFKQSI
001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
Arabidopsis Description
MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.