Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53970 | Canola | nucleus | 70.62 | 89.29 |
| CDX91158 | Canola | nucleus | 67.23 | 85.61 |
| CDX85684 | Canola | nucleus | 66.1 | 83.87 |
| AT5G12870.1 | Thale cress | nucleus | 64.69 | 81.79 |
| CDX78493 | Canola | nucleus | 64.69 | 81.79 |
| Zm00001d023931_P001 | Maize | nucleus | 18.93 | 69.07 |
| CDY05516 | Canola | nucleus | 24.29 | 65.15 |
| CDY05331 | Canola | nucleus | 24.01 | 64.39 |
| CDY35982 | Canola | nucleus | 33.62 | 35.52 |
| CDY27999 | Canola | nucleus | 33.33 | 35.22 |
| CDX74013 | Canola | nucleus | 33.62 | 35.0 |
| CDY70536 | Canola | nucleus | 33.33 | 34.4 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 35.03 | 31.79 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 34.75 | 31.62 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 34.46 | 31.36 |
| CDY50901 | Canola | nucleus | 25.99 | 30.77 |
| CDY32589 | Canola | nucleus | 21.75 | 30.68 |
| CDX93504 | Canola | nucleus | 25.42 | 30.61 |
| CDY08409 | Canola | nucleus | 24.86 | 29.93 |
| CDY42171 | Canola | nucleus | 24.86 | 29.93 |
| CDY42172 | Canola | nucleus | 24.86 | 29.93 |
| CDX94440 | Canola | nucleus | 21.47 | 29.57 |
| CDY06359 | Canola | nucleus | 25.42 | 29.22 |
| CDY38910 | Canola | nucleus | 22.03 | 29.21 |
| CDY22635 | Canola | nucleus | 25.42 | 29.13 |
| CDY50197 | Canola | nucleus | 20.34 | 28.8 |
| EES17106 | Sorghum | nucleus | 33.9 | 28.71 |
| CDY43404 | Canola | nucleus | 23.73 | 28.57 |
| CDX89413 | Canola | nucleus | 21.47 | 28.15 |
| CDY68301 | Canola | nucleus | 26.55 | 28.06 |
| CDY64708 | Canola | nucleus | 20.34 | 27.91 |
| CDX92718 | Canola | nucleus | 20.62 | 27.86 |
| CDY32188 | Canola | nucleus | 26.27 | 27.68 |
| CDY05881 | Canola | nucleus | 20.06 | 27.52 |
| CDX87038 | Canola | nucleus | 26.27 | 27.51 |
| CDY31082 | Canola | nucleus | 25.71 | 26.3 |
| CDY55231 | Canola | nucleus | 24.01 | 25.91 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 33.9 | 25.86 |
| CDX88230 | Canola | nucleus | 25.71 | 25.56 |
| CDX80576 | Canola | nucleus | 25.71 | 25.49 |
| CDY39077 | Canola | nucleus | 25.71 | 25.49 |
| CDY58217 | Canola | nucleus | 24.01 | 25.3 |
| CDY07124 | Canola | nucleus | 24.01 | 25.3 |
| CDY37496 | Canola | nucleus | 25.14 | 24.93 |
| CDX97526 | Canola | nucleus | 23.16 | 24.19 |
| CDY38211 | Canola | nucleus | 24.29 | 23.31 |
| CDY08343 | Canola | nucleus | 24.29 | 23.31 |
| CDY25547 | Canola | nucleus | 24.01 | 22.97 |
| CDY34386 | Canola | extracellular | 9.32 | 11.0 |
| CDY70493 | Canola | cytosol, plastid | 2.54 | 6.82 |
| CDY70602 | Canola | nucleus, plastid | 2.54 | 5.77 |
| CDY05517 | Canola | plastid | 1.13 | 2.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078E8Z9 | EnsemblPlants:CDX97209 | ProteinID:CDX97209 | ProteinID:CDX97209.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00104208001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF577 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TMHMM:TMhelix | UniParc:UPI0004EEBBA9 | SEG:seg |
Description
BnaC09g44160D
Coordinates
chrLK031897:-:1188002..1191494
Molecular Weight (calculated)
40007.6 Da
IEP (calculated)
7.116
GRAVY (calculated)
-0.491
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPEVAIAA THQVKKMKKG LWSPEEDSKL MQYMISNGQG CWSDVAKNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE DLIIRFHSIL GNRWSQIAAR
101: LPGRTDNEIK NFWNSTIKKR LKKMSETSNL VNNSSSSPNA SDSSSNSSSS LEFKDIIGSF MSFQEQGFIN PSLTNIPTNN NPFTTPHMFN HSFNDDFTPH
201: ADGFCGVNTG LQGELYFPPL ECEEGDWYKA DIINQLDDVN TNGAGNVPER MRMEECWDVD QLMNTEIVIH LQEQTGQRLP CLQVVGRRGY RGDQSHWCTS
301: DPPQFDMEQK LVRLESIVCD LGRKKSRFGN GFELVVGVLV VVLVIIAFGV AARM
101: LPGRTDNEIK NFWNSTIKKR LKKMSETSNL VNNSSSSPNA SDSSSNSSSS LEFKDIIGSF MSFQEQGFIN PSLTNIPTNN NPFTTPHMFN HSFNDDFTPH
201: ADGFCGVNTG LQGELYFPPL ECEEGDWYKA DIINQLDDVN TNGAGNVPER MRMEECWDVD QLMNTEIVIH LQEQTGQRLP CLQVVGRRGY RGDQSHWCTS
301: DPPQFDMEQK LVRLESIVCD LGRKKSRFGN GFELVVGVLV VVLVIIAFGV AARM
001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
Arabidopsis Description
MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.