Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008875.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX91158 | Canola | nucleus | 85.0 | 85.61 |
| AT5G12870.1 | Thale cress | nucleus | 85.36 | 85.36 |
| CDX78493 | Canola | nucleus | 84.29 | 84.29 |
| CDX85684 | Canola | nucleus | 83.93 | 84.23 |
| CDX97209 | Canola | nucleus | 89.29 | 70.62 |
| Zm00001d023931_P001 | Maize | nucleus | 23.57 | 68.04 |
| CDY05516 | Canola | nucleus | 31.07 | 65.91 |
| CDY05331 | Canola | nucleus | 30.71 | 65.15 |
| CDY35982 | Canola | nucleus | 43.21 | 36.12 |
| CDX74013 | Canola | nucleus | 43.57 | 35.88 |
| CDY27999 | Canola | nucleus | 42.86 | 35.82 |
| CDY70536 | Canola | nucleus | 43.21 | 35.28 |
| TraesCS5B01G105900.1 | Wheat | nucleus | 44.29 | 31.79 |
| CDY50901 | Canola | nucleus | 33.93 | 31.77 |
| CDX93504 | Canola | nucleus | 33.21 | 31.63 |
| TraesCS5A01G101000.1 | Wheat | nucleus | 43.93 | 31.62 |
| TraesCS5D01G113300.1 | Wheat | nucleus | 43.57 | 31.36 |
| CDY32589 | Canola | nucleus | 27.86 | 31.08 |
| CDY22635 | Canola | nucleus | 33.21 | 30.1 |
| CDY06359 | Canola | nucleus | 32.86 | 29.87 |
| CDY42171 | Canola | nucleus | 31.07 | 29.59 |
| CDY42172 | Canola | nucleus | 31.07 | 29.59 |
| CDY08409 | Canola | nucleus | 31.07 | 29.59 |
| CDX94440 | Canola | nucleus | 27.14 | 29.57 |
| CDY38910 | Canola | nucleus | 27.86 | 29.21 |
| EES17106 | Sorghum | nucleus | 43.21 | 28.95 |
| CDY50197 | Canola | nucleus | 25.71 | 28.8 |
| CDY32188 | Canola | nucleus | 34.29 | 28.57 |
| CDY43404 | Canola | nucleus | 29.64 | 28.23 |
| CDX89413 | Canola | nucleus | 27.14 | 28.15 |
| CDY68301 | Canola | nucleus | 33.57 | 28.06 |
| CDX92718 | Canola | nucleus | 26.07 | 27.86 |
| CDY64708 | Canola | nucleus | 25.36 | 27.52 |
| CDX87038 | Canola | nucleus | 33.21 | 27.51 |
| CDY31082 | Canola | nucleus | 33.57 | 27.17 |
| CDY05881 | Canola | nucleus | 25.0 | 27.13 |
| HORVU5Hr1G027750.1 | Barley | nucleus | 43.21 | 26.08 |
| CDY55231 | Canola | nucleus | 30.36 | 25.91 |
| CDX88230 | Canola | nucleus | 32.86 | 25.84 |
| CDX80576 | Canola | nucleus | 32.86 | 25.77 |
| CDY39077 | Canola | nucleus | 32.5 | 25.49 |
| CDY58217 | Canola | nucleus | 30.36 | 25.3 |
| CDY07124 | Canola | nucleus | 30.36 | 25.3 |
| CDY37496 | Canola | nucleus | 31.79 | 24.93 |
| CDX97526 | Canola | nucleus | 29.29 | 24.19 |
| CDY25547 | Canola | nucleus | 30.71 | 23.24 |
| CDY38211 | Canola | nucleus | 30.36 | 23.04 |
| CDY08343 | Canola | nucleus | 30.36 | 23.04 |
| CDY34386 | Canola | extracellular | 11.07 | 10.33 |
| CDY70493 | Canola | cytosol, plastid | 2.86 | 6.06 |
| CDY70602 | Canola | nucleus, plastid | 2.86 | 5.13 |
| CDY05517 | Canola | plastid | 1.43 | 2.34 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:A0A078ISC5 | UniProt:A0A078ISC5 | EnsemblPlants:CDY53970 | ProteinID:CDY53970 |
| ProteinID:CDY53970.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00011834001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF577 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0002543B63 | SEG:seg |
Description
BnaA10g30020DBnaA10g30020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISC5]
Coordinates
chrLK033258:-:35821..38108
Molecular Weight (calculated)
31760.1 Da
IEP (calculated)
5.965
GRAVY (calculated)
-0.645
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKPEVAAVA ATHQVQKTKK GLWSPEEDSK LMQYMISNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPHE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LVNNSSSSPN ASDSSSNSSS SLEFKDIIGS FMSFQEQGFI NPSLTNIPTT NNLFTTPHMF SHSFNEDFTP
201: CVDGLYGVNT GLQGELYPPL ECEEGDWYKA EINNHLDDVN TNGAGNVPES MRMEECWDLD QLMNTEVPSF YFNFNFKQNI
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LVNNSSSSPN ASDSSSNSSS SLEFKDIIGS FMSFQEQGFI NPSLTNIPTT NNLFTTPHMF SHSFNEDFTP
201: CVDGLYGVNT GLQGELYPPL ECEEGDWYKA EINNHLDDVN TNGAGNVPES MRMEECWDLD QLMNTEVPSF YFNFNFKQNI
001: MRKPEVAIAA STHQVKKMKK GLWSPEEDSK LMQYMLSNGQ GCWSDVAKNA GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EDLIIRFHSI LGNRWSQIAA
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
101: RLPGRTDNEI KNFWNSTIKK RLKKMSDTSN LINNSSSSPN TASDSSSNSA SSLDIKDIIG SFMSLQEQGF VNPSLTHIQT NNPFPTGNMI SHPCNDDFTP
201: YVDGIYGVNA GVQGELYFPP LECEEGDWYN ANINNHLDEL NTNGSGNAPE GMRPVEEFWD LDQLMNTEVP SFYFNFKQSI
Arabidopsis Description
MYB46Transcription factor MYB46 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXV2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.