Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr1P11740_001 | |
GSMUA_Achr6P35890_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G26660.1 | GSMUA_Achr1P11740_001 | AT3G28715.1 | 21798944 |
AT5G26660.1 | GSMUA_Achr6P35890_001 | AT3G28715.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d008206_P001 | Maize | nucleus | 16.53 | 84.93 |
CDY05331 | Canola | nucleus | 28.53 | 81.06 |
CDY05516 | Canola | nucleus | 28.27 | 80.3 |
GSMUA_Achr8P18730_001 | Banana | nucleus | 67.47 | 68.38 |
GSMUA_Achr2P18440_001 | Banana | nucleus | 64.53 | 66.3 |
GSMUA_Achr11P... | Banana | nucleus | 40.27 | 64.81 |
GSMUA_AchrUn_... | Banana | nucleus | 46.4 | 63.27 |
GSMUA_Achr4P25340_001 | Banana | nucleus | 21.33 | 56.34 |
GSMUA_Achr5P18400_001 | Banana | nucleus | 53.87 | 53.87 |
GSMUA_Achr4P19560_001 | Banana | nucleus | 39.73 | 52.65 |
GSMUA_Achr1P25120_001 | Banana | nucleus | 47.47 | 49.44 |
GSMUA_Achr1P18990_001 | Banana | nucleus | 43.2 | 48.5 |
GSMUA_Achr7P17250_001 | Banana | nucleus | 43.73 | 47.81 |
CDX93504 | Canola | nucleus | 36.27 | 46.26 |
GSMUA_Achr3P24580_001 | Banana | nucleus | 42.4 | 46.22 |
GSMUA_Achr3P12200_001 | Banana | nucleus | 44.27 | 46.11 |
Zm00001d040527_P001 | Maize | nucleus | 34.13 | 45.55 |
CDY06359 | Canola | nucleus | 37.33 | 45.45 |
CDY22635 | Canola | nucleus | 37.33 | 45.31 |
GSMUA_Achr2P01830_001 | Banana | nucleus | 37.07 | 45.28 |
CDY50901 | Canola | nucleus | 36.0 | 45.15 |
GSMUA_Achr2P07930_001 | Banana | nucleus | 45.33 | 44.62 |
Bra031669.1-P | Field mustard | nucleus | 38.4 | 44.04 |
Bra020016.1-P | Field mustard | nucleus | 38.67 | 43.67 |
Zm00001d024784_P001 | Maize | nucleus | 29.6 | 43.36 |
AT1G57560.1 | Thale cress | nucleus | 36.0 | 42.99 |
CDY32188 | Canola | nucleus | 37.33 | 41.67 |
CDY31082 | Canola | nucleus | 38.13 | 41.33 |
Bra030783.1-P | Field mustard | nucleus | 37.87 | 41.16 |
AT1G09540.1 | Thale cress | nucleus | 39.47 | 40.44 |
GSMUA_Achr3P28540_001 | Banana | nucleus | 32.8 | 40.07 |
EES02806 | Sorghum | nucleus | 45.07 | 39.58 |
Os05t0140100-01 | Rice | nucleus | 45.07 | 39.58 |
Os01t0285300-01 | Rice | nucleus | 44.27 | 38.78 |
VIT_14s0060g00240.t01 | Wine grape | nucleus | 45.33 | 38.72 |
HORVU1Hr1G017970.4 | Barley | nucleus | 44.27 | 38.69 |
PGSC0003DMT400040774 | Potato | nucleus | 41.87 | 38.57 |
KRH33726 | Soybean | nucleus | 44.0 | 38.46 |
TraesCS1D01G084400.1 | Wheat | nucleus | 44.0 | 38.46 |
Solyc10g044680.1.1 | Tomato | nucleus | 40.8 | 38.44 |
TraesCS1A01G083100.2 | Wheat | nucleus | 44.0 | 38.37 |
OQU77376 | Sorghum | nucleus | 44.0 | 38.37 |
TraesCS1B01G100600.1 | Wheat | nucleus | 44.0 | 38.28 |
Bra036588.1-P | Field mustard | nucleus | 34.13 | 38.21 |
Zm00001d010907_P001 | Maize | nucleus | 43.2 | 38.03 |
CDY68301 | Canola | nucleus | 33.87 | 37.91 |
KRG90431 | Soybean | nucleus | 43.2 | 37.85 |
CDX87038 | Canola | nucleus | 33.87 | 37.57 |
Solyc01g102340.2.1 | Tomato | nucleus | 42.67 | 37.56 |
PGSC0003DMT400047076 | Potato | nucleus | 42.67 | 37.56 |
KRG96660 | Soybean | nucleus | 43.47 | 37.56 |
GSMUA_Achr9P22190_001 | Banana | nucleus | 31.47 | 37.46 |
KRH68389 | Soybean | nucleus | 41.6 | 37.32 |
GSMUA_Achr4P06410_001 | Banana | nucleus | 30.4 | 37.25 |
VIT_07s0005g02480.t01 | Wine grape | nucleus | 44.0 | 36.59 |
KRH68350 | Soybean | nucleus | 40.0 | 35.89 |
GSMUA_AchrUn_... | Banana | nucleus | 26.93 | 35.69 |
CDY58217 | Canola | nucleus | 31.73 | 35.42 |
CDY07124 | Canola | nucleus | 31.73 | 35.42 |
Bra036317.1-P | Field mustard | nucleus | 31.73 | 35.42 |
AT5G26660.1 | Thale cress | nucleus | 33.07 | 35.23 |
GSMUA_Achr4P13280_001 | Banana | nucleus | 28.53 | 35.08 |
CDX88230 | Canola | nucleus | 32.8 | 34.55 |
CDX80576 | Canola | nucleus | 32.8 | 34.45 |
GSMUA_Achr6P35800_001 | Banana | nucleus | 27.47 | 34.45 |
KRH69136 | Soybean | nucleus | 39.73 | 34.33 |
AT4G01680.2 | Thale cress | nucleus | 31.73 | 34.2 |
KRH33667 | Soybean | nucleus | 40.53 | 33.33 |
GSMUA_Achr8P31350_001 | Banana | nucleus | 24.53 | 32.97 |
GSMUA_AchrUn_... | Banana | plasma membrane | 26.93 | 32.58 |
GSMUA_Achr4P11960_001 | Banana | nucleus | 21.07 | 32.11 |
GSMUA_Achr9P11190_001 | Banana | nucleus | 28.0 | 32.11 |
GSMUA_Achr10P... | Banana | nucleus | 25.33 | 31.99 |
GSMUA_Achr4P29410_001 | Banana | nucleus | 23.73 | 31.9 |
GSMUA_Achr8P11340_001 | Banana | nucleus | 23.47 | 31.65 |
GSMUA_Achr8P03510_001 | Banana | nucleus | 26.67 | 31.35 |
GSMUA_Achr2P07780_001 | Banana | nucleus | 24.8 | 31.31 |
GSMUA_Achr1P17480_001 | Banana | nucleus | 22.4 | 30.77 |
GSMUA_Achr6P36930_001 | Banana | nucleus | 25.33 | 30.55 |
Bra009910.1-P | Field mustard | nucleus | 26.4 | 30.0 |
KRG96619 | Soybean | plastid, vacuole | 39.47 | 29.9 |
GSMUA_Achr9P25110_001 | Banana | nucleus | 25.07 | 29.84 |
GSMUA_Achr2P11450_001 | Banana | nucleus | 24.0 | 29.22 |
Bra020526.1-P | Field mustard | nucleus | 33.33 | 28.41 |
GSMUA_Achr4P05410_001 | Banana | nucleus | 21.07 | 27.24 |
CDY05517 | Canola | plastid | 4.0 | 8.77 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSMUA_Achr11G00430_001 | EnsemblPlants:GSMUA_Achr11P00430_001 | EnsemblPlants:GSMUA_Achr11T00430_001 |
InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0RN74 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 |
PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TMHMM:TMhelix |
UniParc:UPI0002948D87 | SEG:seg | : | : | : | : |
Description
Putative MYB2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G00430_001]
Coordinates
chr11:+:259223..260815
Molecular Weight (calculated)
41598.4 Da
IEP (calculated)
8.276
GRAVY (calculated)
-0.385
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGHSCCYKQ KLRKGLWSPD EDEKLIKHIS KHGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAVHLPGRT
101: DNEIKNLWNS CIKKKLRQRG IDPITHEPLA EVDGSDDKFP INSEKNNSGS SGLQIPANAK LTMHVGKSPT SYFSLPLLSF APDYTSGQTT SAAPPICSKP
201: LLCVSNWYSG NCSNSRRSSA VNDSGGVMLQ SSCSYDSGIF PWSELTPDKD VQVQLGGEAE DLRWSEYLHG AFPVSSAMPT QSQPLFGDKI KSGGQFTFHG
301: FSTWHQTQQL QPQLPPSDTS GKDFQSVHIL FLIHTGLMLQ QLHQPSSSVY MFVVGSLFAV FFNGLAFMVL HSLDL
101: DNEIKNLWNS CIKKKLRQRG IDPITHEPLA EVDGSDDKFP INSEKNNSGS SGLQIPANAK LTMHVGKSPT SYFSLPLLSF APDYTSGQTT SAAPPICSKP
201: LLCVSNWYSG NCSNSRRSSA VNDSGGVMLQ SSCSYDSGIF PWSELTPDKD VQVQLGGEAE DLRWSEYLHG AFPVSSAMPT QSQPLFGDKI KSGGQFTFHG
301: FSTWHQTQQL QPQLPPSDTS GKDFQSVHIL FLIHTGLMLQ QLHQPSSSVY MFVVGSLFAV FFNGLAFMVL HSLDL
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VSISKFKRVT TTIQHSLEMG I
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VSISKFKRVT TTIQHSLEMG I
Arabidopsis Description
MYB55Myb domain protein 55 [Source:UniProtKB/TrEMBL;Acc:Q9ZSI4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.