Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY58217 | Canola | nucleus | 86.49 | 89.58 |
| Bra036317.1-P | Field mustard | nucleus | 86.49 | 89.58 |
| CDY07124 | Canola | nucleus | 85.34 | 88.39 |
| GSMUA_Achr11P... | Banana | nucleus | 32.47 | 48.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.2 | 43.27 |
| GSMUA_Achr4P19560_001 | Banana | nucleus | 35.06 | 43.11 |
| AT1G57560.1 | Thale cress | nucleus | 37.36 | 41.4 |
| GSMUA_Achr2P01830_001 | Banana | nucleus | 35.06 | 39.74 |
| GSMUA_Achr3P24580_001 | Banana | nucleus | 37.07 | 37.5 |
| GSMUA_Achr3P12200_001 | Banana | nucleus | 38.22 | 36.94 |
| GSMUA_Achr1P18990_001 | Banana | nucleus | 34.77 | 36.23 |
| AT1G09540.1 | Thale cress | nucleus | 37.64 | 35.79 |
| GSMUA_Achr2P18440_001 | Banana | nucleus | 37.36 | 35.62 |
| GSMUA_Achr7P17250_001 | Banana | nucleus | 35.06 | 35.57 |
| AT5G26660.1 | Thale cress | nucleus | 35.92 | 35.51 |
| GSMUA_Achr1P25120_001 | Banana | nucleus | 36.21 | 35.0 |
| GSMUA_Achr5P18400_001 | Banana | nucleus | 37.64 | 34.93 |
| GSMUA_Achr8P18730_001 | Banana | nucleus | 36.49 | 34.32 |
| GSMUA_Achr2P07930_001 | Banana | nucleus | 37.07 | 33.86 |
| KRH68350 | Soybean | nucleus | 39.94 | 33.25 |
| AT3G12720.1 | Thale cress | nucleus | 29.02 | 32.9 |
| PGSC0003DMT400040774 | Potato | nucleus | 37.64 | 32.19 |
| Solyc10g044680.1.1 | Tomato | nucleus | 36.49 | 31.91 |
| KRH69136 | Soybean | nucleus | 39.66 | 31.8 |
| GSMUA_Achr11P... | Banana | nucleus | 34.2 | 31.73 |
| VIT_07s0005g02480.t01 | Wine grape | nucleus | 41.09 | 31.71 |
| Solyc01g102340.2.1 | Tomato | nucleus | 38.79 | 31.69 |
| PGSC0003DMT400047076 | Potato | nucleus | 38.51 | 31.46 |
| KRH33667 | Soybean | nucleus | 40.23 | 30.7 |
| AT3G48920.1 | Thale cress | nucleus | 22.99 | 30.65 |
| AT5G52260.1 | Thale cress | nucleus | 23.28 | 30.22 |
| AT5G12870.1 | Thale cress | nucleus | 23.85 | 29.64 |
| AT4G25560.1 | Thale cress | nucleus | 23.56 | 28.98 |
| KRG96619 | Soybean | plastid, vacuole | 39.66 | 27.88 |
| AT3G13890.1 | Thale cress | nucleus | 29.31 | 27.79 |
| AT3G08500.1 | Thale cress | nucleus | 25.86 | 26.24 |
| AT1G63910.1 | Thale cress | nucleus | 27.87 | 26.22 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:826853 | ProteinID:AAC72864.1 | ProteinID:AEE82062.1 | ArrayExpress:AT4G01680 |
| EnsemblPlantsGene:AT4G01680 | RefSeq:AT4G01680 | TAIR:AT4G01680 | RefSeq:AT4G01680-TAIR-G | EnsemblPlants:AT4G01680.2 | TAIR:AT4G01680.2 |
| Unigene:At.3837 | GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010119 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | Symbol:MYB55 | InterPro:Myb_dom | RefSeq:NP_001031571.1 | PFAM:PF00249 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF465 | UniProt:Q9ZSI4 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| UniParc:UPI00000A2338 | SEG:seg | : | : | : | : |
Description
MYB55Myb domain protein 55 [Source:UniProtKB/TrEMBL;Acc:Q9ZSI4]
Coordinates
chr4:-:716021..717415
Molecular Weight (calculated)
39319.2 Da
IEP (calculated)
7.603
GRAVY (calculated)
-0.638
Length
348 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGTFLFI QIHLLFGLQR CGKSCRLRWI NYLRPDLKRG AFSQDEENLI IELHAVLGNR
101: WSQIAAQLPG RTDNEIKNLW NSCLKKKLRL RGIDPVTHKL LTEIETGTDD KTKPVEKSQQ TYLVETDGSS STTTCSTNQN NNTDHLYTGN FGFQRLSLEN
201: GSRIAAGSDL GIWIPQTGRN HHHHVDETIP SAVVLPGSMF SSGLTGYRSS NLGLIELENS FSTGPMMTEH QQIQESNYNN STFFGNGNLN WGLTMEENQN
301: PFTISNHSNS SLYSDIKSET NFFGTEATNV GMWPCNQLQP QQHAYGHI
101: WSQIAAQLPG RTDNEIKNLW NSCLKKKLRL RGIDPVTHKL LTEIETGTDD KTKPVEKSQQ TYLVETDGSS STTTCSTNQN NNTDHLYTGN FGFQRLSLEN
201: GSRIAAGSDL GIWIPQTGRN HHHHVDETIP SAVVLPGSMF SSGLTGYRSS NLGLIELENS FSTGPMMTEH QQIQESNYNN STFFGNGNLN WGLTMEENQN
301: PFTISNHSNS SLYSDIKSET NFFGTEATNV GMWPCNQLQP QQHAYGHI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.