Factsheet for Solyc10g005240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g120440.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc10g081530.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12720.1	Solyc03g120440.1.1	AT1G15570.1	21798944
AT3G12720.1	Solyc01g008950.2.1	AT2G41100.1	17360592
AT3G12720.1	Solyc10g077010.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc10g081170.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc11g072240.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc12g099990.1.1	AT2G41100.1	17360592
AT3G12720.1	Solyc10g081530.1.1	AT3G28715.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009650.1.1	Tomato	nucleus	15.36	58.24
Solyc02g082040.2.1	Tomato	nucleus	45.51	48.46
Bra034738.1-P	Field mustard	nucleus	39.42	46.26
CDY42172	Canola	nucleus	39.42	46.26
CDY08409	Canola	nucleus	39.42	46.26
CDY42171	Canola	nucleus	39.42	46.26
KRH43663	Soybean	nucleus	43.19	45.57
VIT_01s0010g00410.t01	Wine grape	nucleus	45.51	45.51
KRH13791	Soybean	nucleus	42.61	45.23
AT3G12720.1	Thale cress	nucleus	39.13	43.97
Bra039339.1-P	Field mustard	nucleus	37.39	43.88
CDY43404	Canola	nucleus	37.39	43.88
GSMUA_Achr9P11190_001	Banana	nucleus	40.87	43.12
GSMUA_Achr8P03510_001	Banana	nucleus	39.71	42.95
GSMUA_Achr9P25110_001	Banana	nucleus	37.1	40.63
TraesCS2A01G230400.1	Wheat	nucleus	44.06	40.11
TraesCS2D01G234000.1	Wheat	nucleus	44.06	39.79
HORVU2Hr1G051030.3	Barley	nucleus	43.48	39.27
TraesCS2B01G252000.1	Wheat	nucleus	43.48	39.27
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	43.19	39.01
Os07t0497500-00	Rice	nucleus	44.06	38.0
EER97244	Sorghum	nucleus	42.03	37.76
Zm00001d021537_P001	Maize	nucleus	28.12	32.01
Solyc03g112390.2.1	Tomato	nucleus	29.86	31.69
Solyc06g071690.2.1	Tomato	nucleus	28.99	31.15
Solyc03g121740.1.1	Tomato	nucleus	32.46	30.68
Solyc08g081500.1.1	Tomato	nucleus	28.41	29.61
Solyc03g025870.2.1	Tomato	nucleus	23.77	29.39
Solyc10g044680.1.1	Tomato	nucleus	31.88	27.64
Solyc01g102340.2.1	Tomato	nucleus	33.62	27.23
Solyc11g065840.1.1	Tomato	nucleus	26.67	26.06
Solyc01g087130.2.1	Tomato	nucleus	25.22	24.72

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K4CX57	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF702
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g005240.2	EnsemblPlants:Solyc10g005240.2.1	UniParc:UPI000276C559
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:189610..191141

Molecular Weight (calculated)

39721.3 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.802

Length

345 amino acids

Sequence
(BLAST)

001: MGHHCCSKQK VKRGLWSPEE DEKLMRHIST QGHGCWSSVP RLAGLQRCGK SCRLRWINYL RPDLRRGSFS EQEERTIIDI HRILGNRWAQ IAKHLPGRTD
101: NEVKNFWNSC IKKKLIAQGL DPNTHNLLKN KSNNSTKKSN NYTHHIQDST SIFTIDHTST NKGITSMDLK STFSPYCDNI TYNHTPIVPN IEYQNPTFAW
201: SEQINHNNTV ITTLQSQTSD QRTRDSLLDF TSCCLMENAA NINVSSYINE NSMWNGTGLE PTTLNPINGQ EEQEMQVVQL QGDQEFPIIK TKFCDDQEDV
301: YKVVHDHDQT VEKTFNDSSN FDFEFMDSGL YTNVNSSMDQ LSWDC

Best Arabidopsis Sequence Match ( AT3G12720.1 )
(BLAST)

001: MREKWEMKRD EMGHRCCGKH KVKRGLWSPE EDEKLLRYIT THGHPSWSSV PKLAGLQRCG KSCRLRWINY LRPDLRRGSF NEEEEQIIID VHRILGNKWA
101: QIAKHLPGRT DNEVKNFWNS CIKKKLLSQG LDPSTHNLMP SHKRSSSSNN NNIPKPNKTT SIMKNPTDLD QSTTAFSITN INPPTSTKPN KLKSPNQTTI
201: PSQTVIPIND NMSSTQTMIP INDPMSSLLD DENMIPHWSD VDGMAIHEAP MLPSDKAVVG VDDDDLNMDI LFNTPSSSAF DPDFASIFSS AMSIDFNPMD
301: DLGSWTF

Arabidopsis Description

ATY53AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.