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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400087467 Potato nucleus 71.23 94.55
Solyc01g009650.1.1 Tomato nucleus 15.07 60.44
VIT_09s0002g01670.t01 Wine grape nucleus 41.64 49.19
GSMUA_Achr6P35800_001 Banana nucleus 37.81 46.15
KRH44125 Soybean nucleus 44.11 46.13
KRH47101 Soybean nucleus 44.38 46.02
KRH10036 Soybean nucleus 44.38 45.89
CDX97526 Canola nucleus 39.18 42.18
CDY37496 Canola nucleus 41.1 42.02
Bra021515.1-P Field mustard nucleus 40.82 41.85
CDY39077 Canola nucleus 40.82 41.74
Bra027389.1-P Field mustard nucleus 39.18 41.09
AT3G13890.1 Thale cress nucleus 40.0 39.78
CDY55231 Canola nucleus 35.34 39.33
Solyc02g082040.2.1 Tomato nucleus 33.15 37.35
HORVU3Hr1G066860.11 Barley nucleus 29.04 36.05
TraesCS3A01G251200.1 Wheat nucleus 28.77 35.84
TraesCS3D01G251600.1 Wheat nucleus 28.77 35.84
Os01t0709000-01 Rice nucleus 29.86 35.5
EES03504 Sorghum nucleus 30.14 34.48
Solyc03g112390.2.1 Tomato nucleus 29.86 33.54
TraesCS3B01G280700.1 Wheat nucleus 26.03 33.22
Solyc06g071690.2.1 Tomato nucleus 28.77 32.71
Solyc10g005240.2.1 Tomato nucleus 30.68 32.46
Solyc08g081500.1.1 Tomato nucleus 28.49 31.42
Solyc03g025870.2.1 Tomato nucleus 21.92 28.67
Solyc11g065840.1.1 Tomato nucleus 27.12 28.05
Solyc01g102340.2.1 Tomato nucleus 31.51 27.0
Solyc10g044680.1.1 Tomato nucleus 29.04 26.63
Solyc01g087130.2.1 Tomato nucleus 24.66 25.57
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.1GO:GO:0000981GO:GO:0001135GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006357GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009739GO:GO:0009834GO:GO:0009987GO:GO:0030154GO:GO:0043565
GO:GO:0044212InterPro:Homeobox-like_sfInterPro:IPR017930UniProt:K4BMX3InterPro:Myb_domPFAM:PF00249
PFscan:PS51294PANTHER:PTHR10641PANTHER:PTHR10641:SF656InterPro:SANT/MybSMART:SM00717SUPFAM:SSF46689
EnsemblPlantsGene:Solyc03g121740.1EnsemblPlants:Solyc03g121740.1.1UniParc:UPI00027655B0SEG:seg::
Description
No Description!
Coordinates
chr3:-:69811506..69813290
Molecular Weight (calculated)
41178.8 Da
IEP (calculated)
7.635
GRAVY (calculated)
-0.477
Length
365 amino acids
Sequence
(BLAST)
001: MGHHTCCNKQ KVKRGLWSPE EDEKLINYIT TYGHACWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHGILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLHLSH GILPDNSIII PTYNNLITNP IPNPSFDNFY SFNPNVPSTN SFMSSISSPL ILDQMNNINH NGDLNLTNHV IMPNSLPNLS
201: FDSISNDPTW FNFNYPNHLQ HDLEYNPSVI KQDNSINSMV TSNISLNCTN GENFMDSTNA AIKNHQDLMM TLPKLSEMIK ENEDGILEST PIVSQHSDTM
301: VVKSALPCTS YIMNPHNNLH RVVNKVELMK SLHMSSSSSS SSSTSSSWSA LSCNQFMMNP RTWDS
Best Arabidopsis Sequence Match ( AT3G13890.2 )
(BLAST)
001: MGHHSCCNKQ KVKRGLWSPE EDEKLINYIN SYGHGCWSSV PKHAGLQRCG KSCRLRWINY LRPDLKRGSF SPQEAALIIE LHSILGNRWA QIAKHLPGRT
101: DNEVKNFWNS SIKKKLMSHH HHGHHHHHLS SMASLLTNLP YHNGFNPTTV DDESSRFMSN IITNTNPNFI TPSHLSLPSP HVMTPLMFPT SREGDFKFLT
201: TNNPNQSHHH DNNHYNNLDI LSPTPTINNH HQPSLSSCPH DNNLQWPALP DFPASTISGF QETLQDYDDA NKLNVFVTPF NDNAKKLLCG EVLEGKVLSS
301: SSPISQDHGL FLPTTYNFQM TSTSDHQHHH RVDSYINHMI IPSSSSSSPI SCGQYVIT
Arabidopsis Description
MYB26Transcription factor MYB26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPG3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.