Factsheet for HORVU3Hr1G016940.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G094500.1	Wheat	nucleus	89.16	89.47
TraesCS3A01G094300.1	Wheat	nucleus	86.36	88.85
TraesCS3B01G109800.1	Wheat	nucleus	86.36	86.97
OQU86237	Sorghum	nucleus	54.2	57.62
Zm00001d008695_P001	Maize	nucleus	54.2	55.96
HORVU3Hr1G047290.2	Barley	nucleus	32.87	31.02
HORVU3Hr1G066860.11	Barley	nucleus	26.57	25.85
PGSC0003DMT400069644	Potato	nucleus	27.97	25.4
Solyc06g071690.2.1	Tomato	nucleus	27.97	24.92
HORVU1Hr1G079040.4	Barley	nucleus, plastid	30.42	24.72
HORVU6Hr1G060600.2	Barley	mitochondrion	19.23	24.66
Solyc03g112390.2.1	Tomato	nucleus	27.27	24.0
PGSC0003DMT400046645	Potato	nucleus	27.27	24.0
HORVU6Hr1G060610.3	Barley	nucleus	25.52	23.7
VIT_17s0000g09080.t01	Wine grape	nucleus	30.07	23.69
HORVU6Hr1G007010.2	Barley	nucleus	25.87	23.64
HORVU2Hr1G091590.1	Barley	nucleus	24.83	23.36
HORVU7Hr1G072450.2	Barley	nucleus	27.27	22.87
KRH63612	Soybean	nucleus	28.67	22.84
HORVU7Hr1G082020.1	Barley	nucleus	27.27	22.29
KRH57123	Soybean	nucleus	28.67	22.16
KRH03235	Soybean	nucleus	27.97	22.1
KRH54334	Soybean	nucleus	27.97	21.98
HORVU1Hr1G017970.4	Barley	nucleus	27.97	18.65
HORVU2Hr1G051030.3	Barley	nucleus	24.13	18.06
HORVU2Hr1G051010.1	Barley	nucleus, plasma membrane	23.43	17.54
HORVU5Hr1G027750.1	Barley	nucleus	26.92	16.59
HORVU1Hr1G079030.2	Barley	nucleus	22.03	13.29

Protein Annotations

EnsemblPlants:HORVU3Hr1G016940.1	EnsemblPlantsGene:HORVU3Hr1G016940	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR10641
PANTHER:PTHR10641:SF661	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002952FD8	UniProt:M0V641	MapMan:15.5.2.1	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:42399002..42400337

Molecular Weight (calculated)

30612.7 Da

IEP (calculated)

5.230

GRAVY (calculated)

-0.570

Length

286 amino acids

Sequence
(BLAST)

001: MVEKPASQAN AGGDVEARKE RKGLWSPEED ERLYTRITRH GVSTWSSVAQ LAGLRRSGKS CRLRWMNYLR PDLKKEPISK REEETIISLQ KSLGNRWSVI
101: AGKMPGRTDN EIKNYWNSRI RKRQNISAGG GKGDGELAKQ GDLPAADDKA NVLAVAGGME PVSSMATGAT APPVPTRFPL FACQLFGGGG EATAVAAAGT
201: TAESTTTHEN NGAGSESDVS VGNGGQDGRE GHYYYCAVEG DIDMVHLMSF DDLLEYPAGG DLLMDAWDQN GLYSANTGSS VDSFGC

Best Arabidopsis Sequence Match ( AT5G26660.1 )
(BLAST)

001: MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT
101: DNEIKNFWNS CLKKKLRRKG IDPTTHKPLI TNELQSLNVI DQKLTSSEVV KSTGSINNLH DQSMVVSSQQ GPWWFPANTT TTNQNSAFCF SSSNTTTVSD
201: QIVSLISSMS TSSSPTPMTS NFSPAPNNWE QLNYCNTVPS QSNSIYSAFF GNQYTEASQT MNNNNPLVDQ HHHHQDMKSW ASEILHYTEH NQSSETVIEA
301: EVKPDIANYY WRSASSSSSP NQEAATLLHD ANVEVYGKNL QKLNNMVFDQ SL

Arabidopsis Description

MYB86Transcription factor MYB86 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPH6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.