Factsheet for VIT_05s0020g01100.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g00320.t01	Wine grape	nucleus	37.71	36.84
VIT_09s0002g01670.t01	Wine grape	nucleus	36.03	34.63
VIT_17s0000g09080.t01	Wine grape	nucleus	41.41	33.88
VIT_19s0085g00940.t01	Wine grape	nucleus	38.05	33.53
VIT_01s0010g00410.t01	Wine grape	nucleus	38.05	32.75
VIT_07s0005g02480.t01	Wine grape	nucleus	49.49	32.59
VIT_14s0060g00240.t01	Wine grape	nucleus	47.81	32.35
VIT_06s0004g02110.t01	Wine grape	nucleus	32.32	29.54
VIT_13s0064g00960.t01	Wine grape	nucleus	27.95	28.72
VIT_16s0050g00050.t01	Wine grape	nucleus	28.62	28.52

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256165	wikigene:100256165	MapMan:15.5.2.1	ProteinID:ABC54960	ProteinID:ABC54960.1
ProteinID:CCB50306	ProteinID:CCB50306.1	EMBL:DQ277653	UniProt:F6HE54	EMBL:FN595749	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100256165	wikigene:LOC100256165	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF934	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00015C793F	ArrayExpress:VIT_05s0020g01100	EnsemblPlantsGene:VIT_05s0020g01100	EnsemblPlants:VIT_05s0020g01100.t01	unigene:Vvi.14071
RefSeq:XP_002275594	RefSeq:XP_002275594.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:2867257..2868482

Molecular Weight (calculated)

33428.9 Da

IEP (calculated)

7.118

GRAVY (calculated)

-0.788

Length

297 amino acids

Sequence
(BLAST)

001: MGKHSCCYKQ KLKRGLWSPE EDEKLFRYIT EHGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF TGQEEKLIVE LHEILGNRWS QIASHLPGRT
101: DNEIKNQWNS SIKKKLRQKG IDPNTHKPLS EIDNRPTANN SSMELELELE PLLNNEESLT TIFCRPGEVT GRLNYESNPH FPFDLHPGSW LSQNSISSQL
201: NSQFHSTSIS TFLQTDFSST GSVLPLQSPR GIQYASASSS SSQFSWGLAD WGLSDQEGKL GDNKQLEHLS TPSCTPPDSQ NQAAHPHSIP DTAWADC

Best Arabidopsis Sequence Match ( AT1G09540.1 )
(BLAST)

001: MGRHSCCYKQ KLRKGLWSPE EDEKLLTHIT NHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SPEEENLIVE LHAVLGNRWS QIASRLPGRT
101: DNEIKNLWNS SIKKKLKQRG IDPNTHKPIS EVESFSDKDK PTTSNNKRSG NDHKSPSSSS ATNQDFFLER PSDLSDYFGF QKLNFNSNLG LSVTTDSSLC
201: SMIPPQFSPG NMVGSVLQTP VCVKPSISLP PDNNSSSPIS GGDHVKLAAP NWEFQTNNNN TSNFFDNGGF SWSIPNSSTS SSQVKPNHNF EEIKWSEYLN
301: TPFFIGSTVQ SQTSQPIYIK SETDYLANVS NMTDPWSQNE NLGTTETSDV FSKDLQRMAV SFGQSL

Arabidopsis Description

MYB61MYB61 [Source:UniProtKB/TrEMBL;Acc:A0A178WLE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.