Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G121100.2 | Wheat | plastid | 96.85 | 96.85 |
| TraesCS5B01G114300.2 | Wheat | plastid | 95.47 | 95.66 |
| TraesCS3A01G523600.1 | Wheat | plastid | 82.09 | 82.25 |
| Os12t0502300-01 | Rice | nucleus, plastid | 71.85 | 74.49 |
| OQU77084 | Sorghum | nucleus | 65.94 | 68.65 |
| GSMUA_Achr1P14000_001 | Banana | nucleus, plasma membrane, plastid | 33.27 | 68.42 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 64.96 | 63.34 |
| Bra000822.1-P | Field mustard | nucleus | 41.93 | 56.5 |
| CDY61993 | Canola | nucleus | 41.34 | 55.7 |
| Bra031463.1-P | Field mustard | nucleus | 39.96 | 55.01 |
| CDY48212 | Canola | nucleus | 40.75 | 54.91 |
| GSMUA_Achr3P25340_001 | Banana | nucleus | 53.74 | 50.37 |
| VIT_09s0002g05240.t01 | Wine grape | nucleus | 48.23 | 50.0 |
| CDX79389 | Canola | plastid | 42.32 | 49.65 |
| CDY53304 | Canola | plastid | 39.96 | 49.63 |
| Bra026756.1-P | Field mustard | plastid | 39.37 | 48.9 |
| CDX81722 | Canola | nucleus, plastid | 38.78 | 48.88 |
| Bra003563.1-P | Field mustard | plastid | 41.54 | 48.84 |
| CDX67944 | Canola | plastid | 41.54 | 48.84 |
| CDY66415 | Canola | nucleus | 41.54 | 48.62 |
| KRH47513 | Soybean | nucleus | 45.28 | 48.32 |
| CDY36574 | Canola | mitochondrion, nucleus | 41.34 | 48.17 |
| KRH44391 | Soybean | nucleus | 44.09 | 47.56 |
| CDY38664 | Canola | nucleus, plastid | 42.32 | 47.25 |
| Solyc03g120440.1.1 | Tomato | nucleus, plastid | 42.32 | 46.94 |
| PGSC0003DMT400006576 | Potato | nucleus | 42.72 | 46.87 |
| AT1G80370.1 | Thale cress | plastid | 42.52 | 46.85 |
| Bra008477.1-P | Field mustard | plastid | 42.13 | 46.83 |
| CDY37592 | Canola | mitochondrion, plastid | 41.93 | 46.61 |
| CDY39984 | Canola | plastid | 40.94 | 46.43 |
| CDX96836 | Canola | nucleus, plastid | 40.16 | 46.36 |
| Bra016654.1-P | Field mustard | nucleus, plastid | 40.16 | 45.84 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 40.35 | 45.56 |
| Bra026120.1-P | Field mustard | nucleus | 41.54 | 45.28 |
| CDX87305 | Canola | plastid | 40.75 | 44.81 |
| Bra035186.1-P | Field mustard | plastid | 40.16 | 44.16 |
| TraesCS4A01G236700.2 | Wheat | plastid | 30.51 | 41.33 |
| TraesCS5A01G072000.1 | Wheat | plastid | 30.32 | 40.96 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 26.18 | 35.0 |
| TraesCS4A01G051300.1 | Wheat | nucleus | 22.64 | 33.53 |
| TraesCS3A01G157000.1 | Wheat | plastid | 33.46 | 33.14 |
| TraesCS3A01G192100.1 | Wheat | nucleus, plastid | 24.02 | 29.47 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 23.43 | 28.4 |
| TraesCS1A01G138300.1 | Wheat | nucleus, plastid | 29.33 | 28.38 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 24.21 | 28.21 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 22.24 | 27.9 |
| TraesCS3A01G333000.2 | Wheat | nucleus | 24.8 | 27.39 |
| TraesCS7A01G229300.1 | Wheat | endoplasmic reticulum | 17.13 | 26.44 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G108500.2 | EnsemblPlantsGene:TraesCS5A01G108500 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF239 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:194451555..194455053
Molecular Weight (calculated)
57173.5 Da
IEP (calculated)
8.727
GRAVY (calculated)
-0.359
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKDIPVL IACQGPSGRV TRAQVANSSR RCGVAHPALV PVRTEQKPTA KGKTKRGALD ENTCVSAVAS APHPKRRAVL KDVTNISCAN SYRNCTAVTK
101: LQLRPTQKVG RNPSKNKQRS KKVPKPPLPA VSGTSFVNDC HNVEEAQKEE LSPPKEEPTA LLENKGSLLQ NTEWNRESGF HEAFFHGRTT GDKFETANSN
201: TGDYAGLNII DIDKDNGNPQ MCISYAAEIY TNLMAAELIR RPKSNYMETL QRDITKGMRG ILIDWLVEVA EEYKLVPDTL YLTVYLIDQF LSWKYIERQK
301: LQLLGITSML IASKYEEICA PRVEEFCFIT DNTYTKDQVL KMECQVLNGL GYNLSVPTIK TFLRRFLRAA QASHKAPSVT LGYLANYLAE LTLTNYNFLR
401: FLPSVVAASV VFLARWTLDQ SDLPWNCTLE HYTSYKSSDI QICVCALWEL QGNTNRCPLN AIREKYPHKK FYFSLQFECV ANMLSPELAQ SLFSRQANDT
501: NPLLINDS
101: LQLRPTQKVG RNPSKNKQRS KKVPKPPLPA VSGTSFVNDC HNVEEAQKEE LSPPKEEPTA LLENKGSLLQ NTEWNRESGF HEAFFHGRTT GDKFETANSN
201: TGDYAGLNII DIDKDNGNPQ MCISYAAEIY TNLMAAELIR RPKSNYMETL QRDITKGMRG ILIDWLVEVA EEYKLVPDTL YLTVYLIDQF LSWKYIERQK
301: LQLLGITSML IASKYEEICA PRVEEFCFIT DNTYTKDQVL KMECQVLNGL GYNLSVPTIK TFLRRFLRAA QASHKAPSVT LGYLANYLAE LTLTNYNFLR
401: FLPSVVAASV VFLARWTLDQ SDLPWNCTLE HYTSYKSSDI QICVCALWEL QGNTNRCPLN AIREKYPHKK FYFSLQFECV ANMLSPELAQ SLFSRQANDT
501: NPLLINDS
001: MGKENAVSGN SIPIHGRPVT RALASALRAS SKLITSSEVA ATTQNQGRVL RAKSKRTALD EKKANAPKKR AVLKDITNVT CENSYTSCFS VAVENIKQIK
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
101: KGRQSSSSSK VASSSATSQV TDAKVEVVSN SAGASLSVFT DTSLGTNETS YSIIAKPSSR SPPRPFGTVE RSCGGASSPK FVDIDSDDKD PLLCSLYAPD
201: IYYNLRVAEL KRRPFPDFME KTQRDVTETM RGILVDWLVE VSEEYTLVPD TLYLTVYLID WFLHGNYVER QRLQLLGITC MLIASKYEEI HAPRIEEFCF
301: ITDNTYTRDQ VLEMESQVLK HFSFQIYTPT SKTFLRRFLR AAQVSFPNQS LEMEFLANYL TELTLMDYPF LKFLPSIIAA SAVFLAKWTL NQSSHPWNPT
401: LEHYTTYKAS DLKASVHALQ DLQLNTKGCS LNSIRMKYRQ DKFKSVAVFS SGELPDKLFI S
Arabidopsis Description
CYCA2-4Cyclin-A2-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C968]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.