Factsheet for TraesCS3A01G157000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G281500.1
TraesCS2B01G298800.1
TraesCS2D01G280300.1
TraesCS6A01G189800.1
TraesCS6B01G235200.1
TraesCS6D01G176800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	TraesCS6A01G189800.1	AT5G07300.1	20706207
AT1G44110.1	TraesCS6B01G235200.1	AT5G07300.1	20706207
AT1G44110.1	TraesCS6D01G176800.1	AT5G07300.1	20706207
AT1G44110.1	TraesCS2A01G281500.1	AT5G14170.1	20706207
AT1G44110.1	TraesCS2B01G298800.1	AT5G14170.1	20706207
AT1G44110.1	TraesCS2D01G280300.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G164600.1	Wheat	plastid	97.27	97.84
TraesCS3B01G183400.1	Wheat	plastid	96.49	97.06
Os12t0298950-00	Rice	nucleus	71.93	82.55
Os01t0233500-01	Rice	nucleus, plastid	81.09	81.89
Os01t0233100-00	Rice	nucleus, plastid	77.78	81.26
Zm00001d032128_P001	Maize	cytosol	23.39	75.95
Zm00001d040381_P001	Maize	plastid	74.07	71.29
Zm00001d009011_P001	Maize	nucleus, plastid	68.62	69.02
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	63.74	65.14
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	62.57	64.2
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	45.03	62.43
KRH64625	Soybean	plastid	56.92	60.33
KRH53279	Soybean	plastid	56.14	60.0
VIT_18s0001g02060.t01	Wine grape	plastid	54.97	56.97
AT1G44110.1	Thale cress	plastid	50.88	56.74
Bra032202.1-P	Field mustard	plastid	46.59	56.64
Zm00001d021353_P002	Maize	mitochondrion, nucleus	22.03	56.5
CDY25649	Canola	plastid	47.95	56.29
CDY65994	Canola	plastid	47.56	55.08
Solyc11g005090.1.1	Tomato	plastid	52.44	54.9
PGSC0003DMT400015424	Potato	plastid	50.29	54.66
Bra023606.1-P	Field mustard	plastid	44.25	54.18
KRH17986	Soybean	plastid	53.02	54.08
CDX85466	Canola	plastid	44.25	53.79
CDY02719	Canola	plastid	44.64	53.38
KRH16410	Soybean	plastid	51.85	52.78
CDY62408	Canola	nucleus, plasma membrane, plastid	21.64	52.61
CDX87520	Canola	nucleus	38.79	51.55
TraesCS1A01G138300.1	Wheat	nucleus, plastid	52.44	51.24
CDX88368	Canola	plastid	37.82	51.05
Bra015671.1-P	Field mustard	plastid	38.4	51.04
CDY41784	Canola	plastid	33.53	50.59
AT1G77390.1	Thale cress	plastid	40.74	47.29
TraesCS4A01G236700.2	Wheat	plastid	33.92	46.4
TraesCS5A01G072000.1	Wheat	plastid	33.72	46.01
CDX92090	Canola	mitochondrion, nucleus	31.77	45.66
Bra022173.1-P	Field mustard	nucleus, plastid	33.14	45.09
TraesCS4A01G051300.1	Wheat	nucleus	24.95	37.32
TraesCS3A01G523600.1	Wheat	plastid	34.5	34.91
TraesCS5A01G108500.2	Wheat	plastid	33.14	33.46
TraesCS4A01G050700.1	Wheat	nucleus	24.76	33.42
TraesCS2A01G404800.1	Wheat	nucleus	23.2	29.38
TraesCS1A01G309800.1	Wheat	nucleus	24.76	29.13
TraesCS3A01G192100.1	Wheat	nucleus, plastid	23.2	28.74
TraesCS7A01G549500.1	Wheat	nucleus	23.39	28.64
TraesCS3A01G333000.2	Wheat	nucleus	24.37	27.17
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	15.59	24.32

Protein Annotations

EnsemblPlants:TraesCS3A01G157000.1	EnsemblPlantsGene:TraesCS3A01G157000	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF239	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.1	:

Description

No Description!

Coordinates

chr3A:-:153594936..153598678

Molecular Weight (calculated)

55866.3 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.265

Length

513 amino acids

Sequence
(BLAST)

001: MSSNSAAPRR FSSAMSTATA KRPAVAEGAG GSRAAAGPAA AQQQAKKRVA LGNLTTNVAA AAAGRAGCGK IAVVTAGNAR LNSTTSAAPV KKGSLPSARN
101: ASANRGSSVK SASTKPAPVT SRHEGSMQKE SAPPRKVPTA VPIAVPAVIP FSSFVSPGHS GDSISTDETM SSCDSMKSPD FEYIDNGDSS LLDSLQRRAN
201: ENLRISDDRT VEGAKWKKDA AAPMEIDNVC DVDDNYEDPQ LCATLASDIY MHLREAETRK RPSTDFLETI QKDVNPSMRA ILIDWLVEVA EEYRLVPDTL
301: YLTVNYIDRY LSGNEINRQR LQLLGVACML IAAKYEEICA PQVEEFCYIT DNTYFKDEVL DMEASVLNYL KFEMTAPTAK CFLRRFVRAA QVCDEDPPLH
401: LEFLANYVAE LSLLEYSLLA YPPSLVAASA IFLSKFILQP AKHPWNSTLA HYTQYKPSEL CDCVKALHRL FSVGPGSNLP AIREKYSQHK YKFVGKKQCP
501: TSVPAEFFRD AAC

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.