Factsheet for Os12t0298950-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0521300-01
Os04t0382100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G44110.1	Os02t0521300-01	AT5G07300.1	20706207
AT1G44110.1	Os04t0382100-01	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0233100-00	Rice	nucleus, plastid	93.96	85.54
Os01t0233500-01	Rice	nucleus, plastid	94.18	82.87
Zm00001d032128_P001	Maize	cytosol	26.85	75.95
Os05t0237100-01	Rice	extracellular	32.21	73.1
TraesCS3D01G164600.1	Wheat	plastid	83.0	72.75
TraesCS3B01G183400.1	Wheat	plastid	82.77	72.55
TraesCS3A01G157000.1	Wheat	plastid	82.55	71.93
Zm00001d040381_P001	Maize	plastid	78.08	65.48
VIT_18s0001g02080.t01	Wine grape	nucleus, plastid	51.68	62.43
Zm00001d009011_P001	Maize	nucleus, plastid	70.92	62.16
GSMUA_Achr2P19220_001	Banana	nucleus, plastid	67.11	59.76
GSMUA_Achr5P06960_001	Banana	nucleus, plastid	66.22	59.2
Zm00001d021353_P002	Maize	mitochondrion, nucleus	25.06	56.0
Bra032202.1-P	Field mustard	plastid	51.45	54.5
KRH53279	Soybean	plastid	58.17	54.17
KRH64625	Soybean	plastid	58.61	54.13
VIT_18s0001g02060.t01	Wine grape	plastid	59.51	53.74
CDY25649	Canola	plastid	51.9	53.09
CDY62408	Canola	nucleus, plasma membrane, plastid	25.06	53.08
AT1G44110.1	Thale cress	plastid	54.14	52.61
CDY65994	Canola	plastid	51.68	52.14
Solyc11g005090.1.1	Tomato	plastid	56.38	51.43
PGSC0003DMT400015424	Potato	plastid	53.69	50.85
Bra023606.1-P	Field mustard	plastid	47.2	50.36
CDX85466	Canola	plastid	47.43	50.24
CDY02719	Canola	plastid	47.87	49.88
KRH17986	Soybean	plastid	55.7	49.5
KRH16410	Soybean	plastid	54.81	48.61
CDX87520	Canola	nucleus	41.83	48.45
Bra015671.1-P	Field mustard	plastid	41.39	47.93
CDX88368	Canola	plastid	40.49	47.63
CDY41784	Canola	plastid	35.79	47.06
AT1G77390.1	Thale cress	plastid	44.52	45.02
CDX92090	Canola	mitochondrion, nucleus	35.79	44.82
Bra022173.1-P	Field mustard	nucleus, plastid	36.24	42.97
Os12t0581800-01	Rice	nucleus, plastid	34.68	40.26
Os12t0502300-01	Rice	nucleus, plastid	36.47	33.27
Os06t0726800-01	Rice	nucleus	24.61	26.25
Os04t0563700-01	Rice	mitochondrion	24.38	25.95
Os01t0281200-01	Rice	nucleus	24.16	25.53
Os03t0607600-00	Rice	nucleus	32.89	24.18
Os05t0493500-00	Rice	nucleus	26.17	24.02
Os03t0208700-00	Rice	nucleus	21.48	23.47
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	19.69	22.22
Os03t0208800-00	Rice	nucleus	11.41	12.85

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	UniProt:A0A0P0Y9L4	ProteinID:BAS71195.1	ProteinID:BAT16811.1	ncoils:Coil
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051301
EnsemblPlantsGene:Os12g0298950	EnsemblPlants:Os12t0298950-00	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF239	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000393AD6E
SEG:seg	:	:	:	:	:

Description

CYCLIN-A1-3Similar to Cyclin-A1-3. (Os12t0298950-00)

Coordinates

chr12:-:11867131..11871436

Molecular Weight (calculated)

50185.8 Da

IEP (calculated)

5.685

GRAVY (calculated)

-0.253

Length

447 amino acids

Sequence
(BLAST)

001: IDFLSSILLQ KFNSATWAAP VKKGSLASGR NVGTNRVSAV KSASTKPASA ISRHESAPQK ESVLPPKVLR IVPTAAPAPV TVPCSSFVSP MHSGDSVSVD
101: ETMSTCDSMK SPDFEYIDNG DSSSVLGSLQ RRANENLRIS EDRDVEETKW KKDAPSPMEI DQICDVDNNY EDPQLCATLA SDIYMHLREA ETRKHPSTDF
201: METLQKDVNP SMRAILIDWL VEVAEEYRLV PDTLYLTVNY IDRYLSGNEI NRQRLQLLGV ACMLIAAKYK EICAPQVEEF CYITDNTYFR DEVLEMEASV
301: LNYLKFEMTA PTAKCFLRRF VRVAQVSDED PALHLEFLAN YVAELSLLEY NLLSYPPSLV AASAIFLAKF ILQPAKHPWN STLAHYTQYK SSELSDCVKA
401: LHRLFCVGPG SNLPAIREKY TQHKYKFVAK KPCPPSIPTE FFRDSTC

Best Arabidopsis Sequence Match ( AT1G44110.1 )
(BLAST)

001: MSNILQNRRS SFSSSTKSSL AKRQAPSSSE NSVKLMPAMT KKRAPLSNIT NQKIASRLQN SDSVHCSNKS AKLKIAPSVC VNASFSSNLQ QSIVPHKVAS
101: SPSKSDDGSV SMDETRSSSD SYKSPQVEYI ENDDVSAVVS IERKALSNLF ITPNSETIDN YCSRDVLSDM KKMDKNQIVN IDSNNGDPQL CATFACDIYK
201: HLRASEAKKR PDVDYMERVQ KDVNSSMRGI LVDWLIEVSE EYRLVPETLY LTVNYIDRYL SGNVISRQKL QLLGVACMMI AAKYEEICAP QVEEFCYITD
301: NTYLKDEVLD MESDVLNYLK FEMTAPTTKC FLRRFVRAAH GVHEAPLMQL ECMANYIAEL SLLEYTMLSH SPSLVAASAI FLAKYILDPT RRPWNSTLQH
401: YTQYKAMELR GCVKDLQRLC STAHGSTLPA VREKYSQHKY KFVAKKFCPS VIPQEFFNNS

Arabidopsis Description

CYCA1-1CYCA1 [Source:UniProtKB/TrEMBL;Acc:A0A178W0H5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.