Factsheet for Os12t0581800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0549700-01
Os01t0550000-01
Os01t0785700-01
Os01t0935700-02
Os02t0121300-01
Os02t0123100-01
Os02t0537700-01
Os02t0557200-01
Os02t0753800-01
Os03t0136900-01
Os03t0137800-01	nucleus
Os03t0146300-01
Os03t0710800-01
Os03t0815200-01
Os04t0442000-01
Os04t0484900-01
Os04t0608500-01
Os05t0301700-01
Os05t0432200-00
Os06t0221200-01
Os07t0492000-01
Os08t0224700-01
Os09t0133600-01
Os10t0471700-02	nucleus
Os10t0518200-01
Os10t0563700-01
Os11t0217300-01
Os11t0546900-01
Os11t0609600-01
Os12t0481100-01
Os12t0489300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Os04t0608500-01	AT1G04810.1	20706207
AT1G47220.1	Os08t0224700-01	AT1G04810.1	20706207
AT1G47220.1	Os11t0609600-01	AT1G22300.1	20706207
AT1G47220.1	Os02t0753800-01	AT1G35720.1	20706207
AT1G47220.1	Os06t0221200-01	AT1G35720.1	20706207
AT1G47220.1	Os02t0557200-01	AT1G59750.1	20706207
AT1G47220.1	Os04t0442000-01	AT1G59750.1	20706207
AT1G47220.1	Os05t0432200-00	AT1G75750.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27960.1	20706207
AT1G47220.1	Os03t0146300-01	AT2G27970.1	20706207
AT1G47220.1	Os03t0815200-01	AT2G44160.1	20706207
AT1G47220.1	Os02t0537700-01	AT3G11630.1	20706207
AT1G47220.1	Os01t0935700-02	AT3G27240.1	20706207
AT1G47220.1	Os05t0301700-01	AT3G27240.1	20706207
AT1G47220.1	Os02t0123100-01	AT3G48750.1	20706207
AT1G47220.1	Os07t0492000-01	AT4G09320.1	20706207
AT1G47220.1	Os10t0563700-01	AT4G09320.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G34870.1	20706207
AT1G47220.1	Os03t0136900-01	AT4G35830.1	20706207
AT1G47220.1	Os02t0121300-01	AT4G38740.1	20706207
AT1G47220.1	Os01t0549700-01	AT5G11170.1	20706207
AT1G47220.1	Os01t0550000-01	AT5G11170.1	20706207
AT1G47220.1	Os03t0710800-01	AT5G38480.1	20706207
AT1G47220.1	Os11t0546900-01	AT5G38480.1	20706207
AT1G47220.1	Os10t0518200-01	AT5G53560.1	20706207
AT5G43080.1	Os01t0785700-01	AT1G55890.1	20706207
AT5G43080.1	Os11t0217300-01	AT2G05830.1	20706207
AT5G43080.1	Os03t0146300-01	AT2G27970.1	20706207
AT5G43080.1	Os03t0137800-01	AT2G32710.1	20018602
AT5G43080.1	Os10t0471700-02	AT2G32710.1	20018602
AT5G43080.1	Os12t0489300-01	AT3G04620.1	20706207
AT5G43080.1	Os02t0123100-01	AT3G48750.1	20706207
AT5G43080.1	Os09t0133600-01	AT4G04020.1	20706207
AT5G43080.1	Os12t0481100-01	AT4G16630.1	20706207
AT5G43080.1	Os04t0484900-01	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G072000.1	Wheat	plastid	71.95	73.67
TraesCS5D01G084700.1	Wheat	nucleus	71.17	72.49
TraesCS5B01G078200.1	Wheat	plastid	70.65	72.15
EES16237	Sorghum	nucleus, plastid	69.61	62.62
GSMUA_Achr10P...	Banana	nucleus	51.43	62.46
Zm00001d030849_P001	Maize	nucleus	68.31	62.17
GSMUA_Achr6P11130_001	Banana	nucleus	61.3	60.36
HORVU5Hr1G018820.2	Barley	nucleus, plastid	70.39	59.69
Zm00001d041334_P001	Maize	nucleus, plastid	67.01	59.04
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	55.58	58.63
KRH52056	Soybean	nucleus	31.69	57.82
CDY06752	Canola	nucleus	41.82	56.49
PGSC0003DMT400030222	Potato	nucleus	49.87	54.24
Solyc12g088500.1.1	Tomato	nucleus	49.35	53.67
PGSC0003DMT400030176	Potato	nucleus	49.61	53.65
Solyc12g088520.1.1	Tomato	nucleus	49.09	53.24
Solyc04g078310.2.1	Tomato	nucleus	50.91	52.83
Solyc12g088530.1.1	Tomato	nucleus	48.57	52.82
PGSC0003DMT400055428	Potato	nucleus	50.39	52.72
CDY22369	Canola	nucleus	47.79	52.42
Solyc12g088470.1.1	Tomato	nucleus	48.83	52.22
Bra033658.1-P	Field mustard	nucleus	47.79	51.69
KRH15427	Soybean	nucleus, plastid	48.83	51.65
AT5G43080.1	Thale cress	nucleus	47.53	51.55
KRH61375	Soybean	nucleus	43.38	51.07
KRH05614	Soybean	nucleus	48.57	50.95
CDY17091	Canola	nucleus	47.27	50.84
KRH52055	Soybean	nucleus	46.49	50.0
CDY17037	Canola	nucleus, plastid	47.01	49.73
Bra040792.1-P	Field mustard	nucleus, plastid	47.01	49.73
AT1G47230.2	Thale cress	nucleus, plastid	47.53	49.46
CDY47595	Canola	nucleus, plastid	47.53	49.33
KRH61369	Soybean	nucleus	41.82	49.24
Bra040710.1-P	Field mustard	nucleus	47.27	49.06
Bra040793.1-P	Field mustard	nucleus	46.23	49.04
CDY47596	Canola	nucleus	46.23	49.04
CDY66770	Canola	nucleus	45.97	48.9
CDY17039	Canola	nucleus	45.97	48.76
Bra032220.1-P	Field mustard	nucleus	44.94	48.46
Os05t0237100-01	Rice	extracellular	24.68	48.22
CDY23653	Canola	nucleus	44.68	48.18
VIT_03s0091g00280.t01	Wine grape	nucleus	42.6	48.09
Bra040753.1-P	Field mustard	nucleus, plastid	45.19	47.93
CDY06757	Canola	nucleus, plastid	45.19	47.93
KRH61371	Soybean	nucleus	42.6	46.99
AT1G47210.2	Thale cress	nucleus	44.42	45.97
AT1G47220.1	Thale cress	nucleus	38.7	45.57
KRH61373	Soybean	nucleus, plastid	44.16	45.33
PGSC0003DMT400056625	Potato	nucleus	44.16	44.74
Solyc10g049360.1.1	Tomato	nucleus	43.9	44.71
Os03t0607600-00	Rice	nucleus	58.96	37.34
Os12t0298950-00	Rice	nucleus	40.26	34.68
Os01t0233100-00	Rice	nucleus, plastid	43.9	34.42
Os01t0233500-01	Rice	nucleus, plastid	44.94	34.06
Os03t0208700-00	Rice	nucleus	34.03	32.03
Os12t0502300-01	Rice	nucleus, plastid	39.22	30.82
Os01t0281200-01	Rice	nucleus	28.05	25.53
Os06t0726800-01	Rice	nucleus	26.75	24.58
Os04t0563700-01	Rice	mitochondrion	25.97	23.81
Os05t0493500-00	Rice	nucleus	27.79	21.97
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	21.82	21.21
Os03t0208800-00	Rice	nucleus	20.52	19.9

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	EntrezGene:4352642	ProteinID:ABA99137.1	EMBL:AK110937	ProteinID:BAF30156.1
ProteinID:BAT17825.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	ProteinID:EAZ21013.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:Os12g0581800	EnsemblPlants:Os12t0581800-01	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF345	UniProt:Q2QN26	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0000680D55	RefSeq:XP_015620063.1	SEG:seg	:

Description

CYCLIN-A3-2Cyclin, A/B/D/E domain containing protein. (Os12t0581800-01)

Coordinates

chr12:+:24142655..24144843

Molecular Weight (calculated)

42223.6 Da

IEP (calculated)

8.692

GRAVY (calculated)

-0.198

Length

385 amino acids

Sequence
(BLAST)

001: MADKENSTPA SAARLTRSSA AAGAQAKRSA AAGVADGGAP PAKRKRVALS DLPTLSNAVV VAPRQPHHPV VIKPSSKQPE PAAEAAAPSG GGGGSPVSSA
101: STSTASPSSG WDPQYASDIY TYLRSMEVEA RRQSAADYIE AVQVDVTANM RAILVDWLVE VADEYKLVAD TLYLAVSYLD RYLSAHPLRR NRLQLLGVGA
201: MLIAAKYEEI SPPHVEDFCY ITDNTYTRQE VVKMESDILK LLEFEMGNPT IKTFLRRFTR SCQEDKKRSS LLLEFMGSYL AELSLLDYGC LRFLPSVVAA
301: SVVFVAKLNI DPYTNPWSKK MQKLTGYKVS ELKDCILAIH DLQLRKKCSN LTAIRDKYKQ HKFKCVSTLL PPVDIPASYL QDLTE

Best Arabidopsis Sequence Match ( AT1G47230.1 )
(BLAST)

001: MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT SVNTSKRQMK KALMIPEASV LIESRSVDPQ MCEPFASDIC
101: AYLREMEGKP KHRPLPDYIE KVQSDLTPHM RAVLVDWLVE VAEEYKLVSD TLYLTISYVD RFLSVKPINR QKLQLVGVSA MLIASKYEEI GPPKVEDFCY
201: ITDNTFTKQE VVSMEADILL ALQFELGSPT IKTFLRRFTR VAQEDFKDSQ LQIEFLCCYL SELSMLDYTC VKYLPSLLSA SAVFLARFII RPKQHPWNQM
301: LEEYTKYKAA DLQVCVGIIH DLYLSRRGNT LEAVRNKYKQ HKYKCVATMP VSPELPLAFF EDITIRGMA

Arabidopsis Description

CYCA3-4Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.