Factsheet for Solyc12g088500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007740.2.1
Solyc01g081640.2.1
Solyc01g089970.2.1
Solyc01g097050.2.1
Solyc01g103050.2.1
Solyc01g111080.2.1
Solyc01g111170.2.1
Solyc02g063070.2.1
Solyc02g067460.2.1
Solyc02g081170.2.1
Solyc02g093900.2.1
Solyc03g031460.1.1
Solyc03g034180.2.1
Solyc03g058920.2.1
Solyc03g082600.2.1
Solyc03g110910.2.1
Solyc04g073990.2.1
Solyc04g074230.2.1
Solyc04g081580.2.1
Solyc05g053650.2.1
Solyc05g055730.2.1
Solyc06g066060.2.1
Solyc07g052350.2.1
Solyc07g056490.2.1
Solyc08g022210.2.1
Solyc08g061000.2.1
Solyc08g066330.1.1
Solyc09g055420.1.1
Solyc09g091750.2.1
Solyc09g091780.2.1	nucleus
Solyc10g054910.1.1
Solyc10g082030.1.1
Solyc11g008870.1.1
Solyc12g005860.1.1
Solyc12g011310.1.1
Solyc12g098310.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47220.1	Solyc05g053650.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc09g091750.2.1	AT1G04810.1	20706207
AT1G47220.1	Solyc04g074230.2.1	AT1G22300.1	20706207
AT1G47220.1	Solyc04g073990.2.1	AT1G35720.1	20706207
AT1G47220.1	Solyc01g103050.2.1	AT1G59750.1	20706207
AT1G47220.1	Solyc01g111080.2.1	AT1G75750.1	20706207
AT1G47220.1	Solyc07g056490.2.1	AT1G78380.1	20706207
AT1G47220.1	Solyc12g011310.1.1	AT1G78380.1	20706207
AT1G47220.1	Solyc07g052350.2.1	AT2G05710.1	20706207
AT1G47220.1	Solyc12g005860.1.1	AT2G05710.1	20706207
AT1G47220.1	Solyc05g055730.2.1	AT2G44160.1	20706207
AT1G47220.1	Solyc11g008870.1.1	AT2G44160.1	20706207
AT1G47220.1	Solyc02g067460.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc03g058920.2.1	AT3G01280.1	20706207
AT1G47220.1	Solyc01g007740.2.1	AT3G11630.1	20706207
AT1G47220.1	Solyc10g082030.1.1	AT3G11630.1	20706207
AT1G47220.1	Solyc02g093900.2.1	AT3G27240.1	20706207
AT1G47220.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT1G47220.1	Solyc01g089970.2.1	AT4G09320.1	20706207
AT1G47220.1	Solyc09g055420.1.1	AT4G09320.1	20706207
AT1G47220.1	Solyc01g111170.2.1	AT4G38740.1	20706207
AT1G47220.1	Solyc10g054910.1.1	AT4G38740.1	20706207
AT1G47220.1	Solyc06g066060.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc08g061000.2.1	AT5G11170.1	20706207
AT1G47220.1	Solyc02g063070.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g034180.2.1	AT5G38480.1	20706207
AT1G47220.1	Solyc03g082600.2.1	AT5G53560.1	20706207
AT5G43080.1	Solyc03g031460.1.1	AT1G55890.1	20706207
AT5G43080.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT5G43080.1	Solyc01g081640.2.1	AT2G31920.1	20706207
AT5G43080.1	Solyc09g091780.2.1	AT2G32710.1	20018602
AT5G43080.1	Solyc12g098310.1.1	AT2G32710.1	20018602
AT5G43080.1	Solyc01g097050.2.1	AT3G04620.1	20706207
AT5G43080.1	Solyc08g066330.1.1	AT3G48750.1	20706207
AT5G43080.1	Solyc02g081170.2.1	AT4G04020.1	20706207
AT5G43080.1	Solyc04g081580.2.1	AT4G16630.1	20706207
AT5G43080.1	Solyc03g110910.2.1	AT5G50320.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088470.1.1	Tomato	nucleus	93.22	91.67
PGSC0003DMT400030222	Potato	nucleus	91.53	91.53
Solyc12g088520.1.1	Tomato	nucleus	87.29	87.04
Solyc12g088530.1.1	Tomato	nucleus	78.81	78.81
Solyc04g078310.2.1	Tomato	nucleus	71.47	68.19
VIT_18s0001g09580.t01	Wine grape	nucleus, plastid	67.23	65.21
KRH52056	Soybean	nucleus	37.29	62.56
OQU91386	Sorghum	nucleus	44.35	60.15
GSMUA_Achr10P...	Banana	nucleus	52.26	58.36
CDY06752	Canola	nucleus	46.33	57.54
CDY22369	Canola	nucleus	56.5	56.98
Bra033658.1-P	Field mustard	nucleus	56.5	56.18
TraesCS4D01G076900.1	Wheat	nucleus	58.19	55.68
KRH15427	Soybean	nucleus, plastid	57.06	55.49
GSMUA_Achr2P21530_001	Banana	cytosol, nucleus, plastid	44.63	55.24
HORVU4Hr1G013320.1	Barley	nucleus	57.91	54.96
TraesCS4B01G078300.1	Wheat	nucleus	57.34	54.72
TraesCS4A01G236700.2	Wheat	plastid	57.34	54.13
AT5G43080.1	Thale cress	nucleus	54.24	54.08
KRH05614	Soybean	nucleus	55.65	53.68
CDY66770	Canola	nucleus	54.8	53.59
GSMUA_Achr6P11130_001	Banana	nucleus	58.19	52.69
Bra040753.1-P	Field mustard	nucleus, plastid	53.95	52.62
CDY06757	Canola	nucleus, plastid	53.95	52.62
KRH61375	Soybean	nucleus	48.59	52.6
CDY17091	Canola	nucleus	53.11	52.51
AT1G47210.2	Thale cress	nucleus	55.08	52.42
AT1G47230.2	Thale cress	nucleus, plastid	54.52	52.16
CDY47596	Canola	nucleus	53.39	52.07
KRH61369	Soybean	nucleus	48.02	51.99
KRH52055	Soybean	nucleus	52.54	51.96
Bra040793.1-P	Field mustard	nucleus	53.11	51.79
CDY17039	Canola	nucleus	52.82	51.52
KRH61371	Soybean	nucleus	50.56	51.29
Bra032220.1-P	Field mustard	nucleus	51.41	50.98
CDY23653	Canola	nucleus	51.13	50.7
CDY17037	Canola	nucleus, plastid	51.69	50.27
Bra040710.1-P	Field mustard	nucleus	52.54	50.13
Bra040792.1-P	Field mustard	nucleus, plastid	51.41	50.0
Zm00001d013744_P001	Maize	nucleus	50.28	49.86
Solyc10g049360.1.1	Tomato	nucleus	53.11	49.74
Zm00001d033365_P002	Maize	nucleus	52.26	49.73
CDY47595	Canola	nucleus, plastid	51.98	49.6
Os12t0581800-01	Rice	nucleus, plastid	53.67	49.35
KRH61373	Soybean	nucleus, plastid	52.26	49.33
TraesCS5B01G078200.1	Wheat	plastid	52.26	49.07
GSMUA_Achr2P21520_001	Banana	nucleus	49.72	48.89
TraesCS5D01G084700.1	Wheat	nucleus	51.98	48.68
TraesCS5A01G072000.1	Wheat	plastid	51.69	48.67
AT1G47220.1	Thale cress	nucleus	43.5	47.09
TraesCS4D01G253200.1	Wheat	nucleus	32.2	46.72
Zm00001d030849_P001	Maize	nucleus	55.37	46.34
EES16237	Sorghum	nucleus, plastid	55.65	46.03
Zm00001d041334_P001	Maize	nucleus, plastid	52.82	42.79
TraesCS4B01G254000.1	Wheat	nucleus	44.07	41.49
TraesCS4D01G253900.1	Wheat	nucleus	44.35	41.32
TraesCS4A01G050700.1	Wheat	nucleus	43.5	40.53
HORVU5Hr1G018820.2	Barley	nucleus, plastid	51.41	40.09
EER95303	Sorghum	nucleus, plastid	42.94	39.9
TraesCS4A01G051300.1	Wheat	nucleus	37.85	39.07
TraesCS4B01G253100.1	Wheat	nucleus	37.57	39.0
HORVU4Hr1G069310.3	Barley	nucleus	43.5	37.11
Solyc06g065680.2.1	Tomato	nucleus, plastid	44.07	32.84
Solyc03g120440.1.1	Tomato	nucleus, plastid	41.24	31.88
Solyc11g005090.1.1	Tomato	plastid	43.22	31.22
Zm00001d048127_P001	Maize	plastid	40.11	29.65
Os03t0607600-00	Rice	nucleus	49.72	28.95
Os03t0208700-00	Rice	nucleus	33.33	28.85
Solyc02g061650.1.1	Tomato	nucleus	28.25	28.49
Solyc04g082430.2.1	Tomato	nucleus	27.68	24.94
Solyc03g032190.2.1	Tomato	nucleus	30.23	24.83
Solyc02g082820.2.1	Tomato	nucleus	29.1	23.73
Solyc12g094600.1.1	Tomato	nucleus	28.25	23.53
Solyc01g009040.2.1	Tomato	nucleus	28.81	23.45
Solyc06g073610.2.1	Tomato	nucleus	28.81	23.18
Solyc10g078330.1.1	Tomato	nucleus	27.68	23.17
Solyc10g080950.1.1	Tomato	nucleus	26.84	20.56
Os03t0208800-00	Rice	nucleus	18.08	16.12
Solyc07g066660.2.1	Tomato	nucleus	24.01	11.5

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	InterPro:Cyclin-A_plant	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:K4DGS1
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF270
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc12g088500.1	EnsemblPlants:Solyc12g088500.1.1	UniParc:UPI000276AB5A

Description

No Description!

Coordinates

chr12:-:63837985..63839700

Molecular Weight (calculated)

40960.9 Da

IEP (calculated)

8.585

GRAVY (calculated)

-0.320

Length

354 amino acids

Sequence
(BLAST)

001: MADQENFVRV TRLTKKRAAE AMVQQLQQPN KKRVVLSEIQ DLCNVGINQI EDKVFVSEPL RPKCEQIIKR ELKTSDDDPQ MCSAYASDIY DYLHQMEIEK
101: KRRPLPDYLE KVQKDVSANM RGVLVDWLVE VTDEYKLLSD TLYLAVSYID RFLSVNVIPR KKLQLLGVSS MLIAAKYEEI NPPDVGEFCY ITDNSYSKKE
201: MVKMEADVLK CLKFEMGNPT IKTFLEQFTK IAKQDHKKNN LQLEFLGHYL AELSLLDYNC VKFLPSLVAA AVLFLSRFTL QPKSHPWSLA LQRCSGYRPG
301: DLKECVLIIH DLQLSRRGRT LTALRDKYKL HKFKCVSTLS SPLEIPDSFF KDTR

Best Arabidopsis Sequence Match ( AT5G43080.1 )
(BLAST)

001: MADEKENCVR MTRAATKRKA SMEAAIDKER INKKRVVLGE LPNLSNIKKS RKATTKQKKK SVSIPTIETL NSDIDTRSDD PQMCGPYVTS IFEYLRQLEV
101: KSRPLVDYIE KIQKDVTSNM RGVLVDWLVE VAEEYKLLSD TLYLAVSYID RFLSLKTVNK QRLQLLGVTS MLIASKYEEI TPPNVDDFCY ITDNTYTKQE
201: IVKMEADILL ALQFELGNPT SNTFLRRFTR VAQEDFEMSH LQMEFLCSYL SELSMLDYQS VKFLPSTVAA SAVFLARFII RPKQHPWNVM LEEYTRYKAG
301: DLKECVAMIH DLYLSRKCGA LEAIREKYKQ HKFKCVATMP VSPELPLTVF EDVNI

Arabidopsis Description

CYCA3-1Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.