Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G254000.1 | Wheat | nucleus | 93.42 | 94.41 |
| TraesCS4A01G050700.1 | Wheat | nucleus | 92.89 | 92.89 |
| HORVU4Hr1G069310.3 | Barley | nucleus | 75.53 | 69.16 |
| TraesCS4D01G253200.1 | Wheat | nucleus | 38.42 | 59.84 |
| EER95303 | Sorghum | nucleus, plastid | 58.16 | 58.01 |
| KRH52056 | Soybean | nucleus | 28.42 | 51.18 |
| CDY06752 | Canola | nucleus | 37.37 | 49.82 |
| GSMUA_Achr2P21530_001 | Banana | cytosol, nucleus, plastid | 36.84 | 48.95 |
| VIT_18s0001g09580.t01 | Wine grape | nucleus, plastid | 43.68 | 45.48 |
| PGSC0003DMT400030222 | Potato | nucleus | 41.58 | 44.63 |
| TraesCS5D01G084700.1 | Wheat | nucleus | 44.21 | 44.44 |
| Solyc12g088500.1.1 | Tomato | nucleus | 41.32 | 44.35 |
| Solyc12g088520.1.1 | Tomato | nucleus | 40.79 | 43.66 |
| PGSC0003DMT400030176 | Potato | nucleus | 40.53 | 43.26 |
| AT5G43080.1 | Thale cress | nucleus | 40.26 | 43.1 |
| Solyc12g088470.1.1 | Tomato | nucleus | 40.79 | 43.06 |
| CDY17091 | Canola | nucleus | 40.53 | 43.02 |
| Solyc12g088530.1.1 | Tomato | nucleus | 40.0 | 42.94 |
| GSMUA_Achr2P21520_001 | Banana | nucleus | 40.26 | 42.5 |
| KRH61371 | Soybean | nucleus | 38.68 | 42.12 |
| Bra040792.1-P | Field mustard | nucleus, plastid | 40.26 | 42.03 |
| CDY17037 | Canola | nucleus, plastid | 40.26 | 42.03 |
| CDY66770 | Canola | nucleus | 40.0 | 41.99 |
| KRH61375 | Soybean | nucleus | 36.05 | 41.9 |
| CDY47596 | Canola | nucleus | 40.0 | 41.87 |
| Bra040793.1-P | Field mustard | nucleus | 40.0 | 41.87 |
| CDY47595 | Canola | nucleus, plastid | 40.79 | 41.78 |
| Bra040710.1-P | Field mustard | nucleus | 40.79 | 41.78 |
| CDY17039 | Canola | nucleus | 39.74 | 41.6 |
| AT1G47220.1 | Thale cress | nucleus | 35.79 | 41.59 |
| Solyc04g078310.2.1 | Tomato | nucleus | 40.53 | 41.51 |
| KRH15427 | Soybean | nucleus, plastid | 39.74 | 41.48 |
| Zm00001d048127_P001 | Maize | plastid | 52.11 | 41.34 |
| Bra040753.1-P | Field mustard | nucleus, plastid | 39.47 | 41.32 |
| CDY06757 | Canola | nucleus, plastid | 39.47 | 41.32 |
| CDY22369 | Canola | nucleus | 38.16 | 41.31 |
| PGSC0003DMT400055428 | Potato | nucleus | 40.0 | 41.3 |
| KRH61369 | Soybean | nucleus | 35.53 | 41.28 |
| Bra032220.1-P | Field mustard | nucleus | 38.68 | 41.18 |
| Bra033658.1-P | Field mustard | nucleus | 38.42 | 41.01 |
| CDY23653 | Canola | nucleus | 38.42 | 40.9 |
| KRH05614 | Soybean | nucleus | 39.47 | 40.87 |
| TraesCS4D01G076900.1 | Wheat | nucleus | 39.74 | 40.81 |
| AT1G47210.2 | Thale cress | nucleus | 39.74 | 40.59 |
| KRH52055 | Soybean | nucleus | 38.16 | 40.5 |
| Os03t0208700-00 | Rice | nucleus | 42.63 | 39.61 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 38.42 | 39.46 |
| KRH61373 | Soybean | nucleus, plastid | 38.42 | 38.93 |
| VIT_03s0091g00280.t01 | Wine grape | nucleus | 34.21 | 38.12 |
| Solyc10g049360.1.1 | Tomato | nucleus | 36.84 | 37.04 |
| PGSC0003DMT400056625 | Potato | nucleus | 36.84 | 36.84 |
| TraesCS1D01G134100.2 | Wheat | nucleus, plastid | 34.47 | 27.46 |
| TraesCS3D01G529100.1 | Wheat | plastid | 36.05 | 27.13 |
| TraesCS5D01G121100.2 | Wheat | plastid | 35.0 | 26.18 |
| TraesCS3D01G164600.1 | Wheat | plastid | 33.42 | 24.9 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 26.58 | 24.11 |
| TraesCS3D01G195200.1 | Wheat | plastid | 25.79 | 23.73 |
| Os03t0208800-00 | Rice | nucleus | 24.47 | 23.43 |
| TraesCS1D01G309400.1 | Wheat | nucleus | 26.84 | 23.34 |
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 26.05 | 22.71 |
| TraesCS3D01G326600.1 | Wheat | nucleus | 26.84 | 22.42 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 24.74 | 22.33 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G253900.1 | EnsemblPlantsGene:TraesCS4D01G253900 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF231 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.1 | : |
Description
No Description!
Coordinates
chr4D:-:422550342..422552582
Molecular Weight (calculated)
42206.2 Da
IEP (calculated)
9.295
GRAVY (calculated)
-0.174
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPRGRRRKQ QGAAEDKENT AGTAPPPRKR PRCTERKALA ELPTAPTANN ASAAPMGAPS KPMTRAAARE AAAAAVEEEA RRREGSAIAA RPAASRLTDA
101: GAAQASVGPY VADIDGYLRS LEVKQLRRPR DDYMVAMQKD ISATMRGILV DWLVDVVDEF NLLVDTLYLA VSYIDRFLTA SVITRDRLQL LGVASLFVAA
201: KYEEIHVPKL DKFSDITDGT YTNQQVVKME ADILKYLNFQ MGSPTIRTFL LRFLISCRGG NCASAKRLEL MCCYLAELSL LDYDCIRFLP SAIVAACLFL
301: ARFTISPKIR PWNLTLQEKT GYKVSDLSSC ILRIHDLQLG RHYSNLKAIR SKYSERKFGC VSMMASPEEI PVSLLKDLDK
101: GAAQASVGPY VADIDGYLRS LEVKQLRRPR DDYMVAMQKD ISATMRGILV DWLVDVVDEF NLLVDTLYLA VSYIDRFLTA SVITRDRLQL LGVASLFVAA
201: KYEEIHVPKL DKFSDITDGT YTNQQVVKME ADILKYLNFQ MGSPTIRTFL LRFLISCRGG NCASAKRLEL MCCYLAELSL LDYDCIRFLP SAIVAACLFL
301: ARFTISPKIR PWNLTLQEKT GYKVSDLSSC ILRIHDLQLG RHYSNLKAIR SKYSERKFGC VSMMASPEEI PVSLLKDLDK
001: MTEQEICVRV TRAAAKRKAS TAMGIDGDRV NKKRVVLGEL LNVSNVNLLA NLNQKKETQK PKRNLKPPPA KQIKSAPVAI IDLESKSDID SRSDDPQMCG
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
101: PYVADIYEYL RQLEVKPKQR PLPDYIEKVQ KDVTPSMRGV LVDWLVEVAE EYKLGSETLY LTVSHIDRFL SLKTVNKQKL QLVGVSAMLI ASKYEEISPP
201: KVDDFCYITD NTFSKQDVVK MEADILLALQ FELGRPTINT FMRRFTRVAQ DDFKVPHLQL EPLCCYLSEL SILDYKTVKF VPSLLAASAV FLARFIIRPK
301: QHPWNQMLEE YTKYKAADLQ VCVGIIHDLY LSRRGGALQA VREKYKHHKF QCVATMPVSP ELPVTFWEDV TI
Arabidopsis Description
CYCA3-2Cyclin-A3-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.