Factsheet for TraesCS6D01G066700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 22160430
plastid: 22736107
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G068900.1	Wheat	cytosol	100.0	100.0
TraesCS6B01G093100.2	Wheat	cytosol	98.83	98.83
EES04388	Sorghum	cytosol	88.3	88.3
Os02t0121300-01	Rice	extracellular	87.72	87.21
Zm00001d050635_P001	Maize	plastid	86.55	86.55
Zm00001d016661_P001	Maize	plastid	86.55	86.05
Zm00001d016660_P001	Maize	cytosol	86.55	86.05
EES05164	Sorghum	cytosol	86.55	86.05
Bra037296.1-P	Field mustard	cytosol	82.46	82.46
CDY47469	Canola	cytosol	82.46	82.46
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	82.46	81.98
KRH51416	Soybean	cytosol	82.46	81.98
CDY12100	Canola	cytosol	82.46	81.98
CDX90292	Canola	cytosol	82.46	81.98
Bra010728.1-P	Field mustard	cytosol	82.46	81.98
CDY26779	Canola	cytosol	81.87	81.87
Bra011568.1-P	Field mustard	cytosol	81.87	81.87
HORVU6Hr1G012570.2	Barley	cytosol	98.25	81.55
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	81.87	81.4
CDX69094	Canola	cytosol	81.87	81.4
KRH29120	Soybean	endoplasmic reticulum, nucleus	81.29	80.81
Solyc01g111170.2.1	Tomato	extracellular, nucleus	80.7	80.7
VIT_18s0001g14400.t01	Wine grape	extracellular	80.7	80.23
PGSC0003DMT400004125	Potato	extracellular	80.12	80.12
PGSC0003DMT400011344	Potato	cytosol	80.12	79.65
Solyc10g054910.1.1	Tomato	extracellular, unclear	80.12	79.65
VIT_03s0038g01930.t01	Wine grape	cytosol	80.12	79.65
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	70.18	79.47
AT4G38740.1	Thale cress	cytosol	79.53	79.07
CDY22414	Canola	cytosol, extracellular	78.36	77.91
Bra033574.1-P	Field mustard	cytosol	78.36	77.91
CDX72741	Canola	cytosol	78.36	77.91
AT2G21130.1	Thale cress	cytosol	78.36	77.01
AT2G16600.1	Thale cress	cytosol	77.78	76.88
AT4G34870.1	Thale cress	cytosol	75.44	75.0
TraesCS4D01G001600.1	Wheat	mitochondrion	73.68	70.39
TraesCS7D01G403300.2	Wheat	mitochondrion	66.67	52.29
TraesCS5D01G479900.1	Wheat	nucleus	57.89	50.0
TraesCS5D01G334800.2	Wheat	endoplasmic reticulum	57.31	45.37
TraesCS1D01G000800.2	Wheat	plastid	61.99	43.27
TraesCS3D01G159000.1	Wheat	plastid	58.48	41.67
TraesCS7D01G176900.1	Wheat	cytosol	64.33	29.33
TraesCS6D01G293100.1	Wheat	cytosol	62.57	26.23
TraesCS2D01G244700.1	Wheat	nucleus	60.23	16.2
TraesCS6D01G167200.3	Wheat	cytosol	54.97	11.07

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF403	SUPFAM:SSF50891	EnsemblPlantsGene:TraesCS6D01G066700	EnsemblPlants:TraesCS6D01G066700.1	TIGR:cd01926	SEG:seg

Description

No Description!

Coordinates

chr6D:-:32694326..32694841

Molecular Weight (calculated)

18392.1 Da

IEP (calculated)

8.379

GRAVY (calculated)

-0.202

Length

171 amino acids

Sequence
(BLAST)

001: MANPRVFFDM TVGGAPAGRI VMELYKDAVP RTVENFRALC TGEKGVGKSG KPLHYKGSAF HRVIPDFMCQ GGDFTRGNGT GGESIYGEKF ADEKFVHKHT
101: KPGILSMANA GPNTNGSQFF ICTVPCNWLD GKHVVFGEVV EGMDVVKNIE KVGSRSGTCS KQVVIADCGQ L

Best Arabidopsis Sequence Match ( AT2G21130.1 )
(BLAST)

001: MASHPKVFFD MTIGGAPAGK IVMELYTDKT PKTAENFRAL CTGEKGVGRS GKPLHFKGSS FHRVIPNFMC QGGDFTKGNG TGGESIYGAK FEDENFERKH
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS

Arabidopsis Description

CYP19-2Peptidyl-prolyl cis-trans isomerase CYP19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.