Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12100 | Canola | cytosol | 93.02 | 93.02 |
| CDX90292 | Canola | cytosol | 93.02 | 93.02 |
| Bra010728.1-P | Field mustard | cytosol | 93.02 | 93.02 |
| KRH60719 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 89.53 | 89.53 |
| AT2G21130.1 | Thale cress | cytosol | 90.12 | 89.08 |
| KRH51416 | Soybean | cytosol | 88.95 | 88.95 |
| KRH24153 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 85.47 | 85.47 |
| VIT_18s0001g14400.t01 | Wine grape | extracellular | 83.72 | 83.72 |
| KRH29120 | Soybean | endoplasmic reticulum, nucleus | 83.72 | 83.72 |
| PGSC0003DMT400011344 | Potato | cytosol | 82.56 | 82.56 |
| Solyc10g054910.1.1 | Tomato | extracellular, unclear | 81.98 | 81.98 |
| AT2G16600.1 | Thale cress | cytosol | 81.98 | 81.5 |
| PGSC0003DMT400004125 | Potato | extracellular | 80.81 | 81.29 |
| VIT_03s0038g01930.t01 | Wine grape | cytosol | 80.81 | 80.81 |
| Zm00001d050635_P001 | Maize | plastid | 80.23 | 80.7 |
| Solyc01g111170.2.1 | Tomato | extracellular, nucleus | 80.23 | 80.7 |
| EES04388 | Sorghum | cytosol | 79.65 | 80.12 |
| Zm00001d016660_P001 | Maize | cytosol | 79.65 | 79.65 |
| Zm00001d016661_P001 | Maize | plastid | 79.65 | 79.65 |
| TraesCS6D01G066700.1 | Wheat | golgi, plastid | 79.07 | 79.53 |
| TraesCS6B01G093100.2 | Wheat | cytosol | 79.07 | 79.53 |
| TraesCS6A01G068900.1 | Wheat | cytosol | 79.07 | 79.53 |
| EES05164 | Sorghum | cytosol | 79.07 | 79.07 |
| AT4G34870.1 | Thale cress | cytosol | 78.49 | 78.49 |
| Os02t0121300-01 | Rice | extracellular | 78.49 | 78.49 |
| AT3G56070.1 | Thale cress | cytosol | 73.84 | 72.16 |
| TraesCS6A01G405900.1 | Wheat | cytosol | 69.77 | 71.86 |
| HORVU6Hr1G092950.1 | Barley | endoplasmic reticulum, golgi | 73.26 | 66.67 |
| HORVU6Hr1G012570.2 | Barley | cytosol | 79.65 | 66.5 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 69.77 | 59.7 |
| AT5G58710.1 | Thale cress | endoplasmic reticulum | 68.02 | 57.35 |
| TraesCS6B01G450300.1 | Wheat | cytosol | 67.44 | 52.97 |
| TraesCS6B01G450400.1 | Wheat | cytosol | 65.7 | 51.6 |
| TraesCS6A01G405800.1 | Wheat | cytosol | 72.67 | 50.61 |
| AT2G38730.1 | Thale cress | cytosol | 57.56 | 49.75 |
| AT3G55920.1 | Thale cress | endoplasmic reticulum | 64.53 | 48.68 |
| AT5G13120.1 | Thale cress | plastid | 65.12 | 43.24 |
| AT4G34960.1 | Thale cress | endoplasmic reticulum | 55.23 | 42.41 |
| AT3G62030.2 | Thale cress | endoplasmic reticulum | 63.95 | 35.14 |
| AT2G15790.1 | Thale cress | cytosol | 59.88 | 28.53 |
| AT3G63400.4 | Thale cress | nucleus | 66.28 | 20.0 |
| AT4G32420.6 | Thale cress | nucleus | 48.84 | 10.04 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:830029 | UniProt:A0A178V2S8 | ProteinID:AEE86970.1 | EMBL:AK226392 |
| ArrayExpress:AT4G38740 | EnsemblPlantsGene:AT4G38740 | RefSeq:AT4G38740 | TAIR:AT4G38740 | RefSeq:AT4G38740-TAIR-G | EnsemblPlants:AT4G38740.1 |
| TAIR:AT4G38740.1 | EMBL:AY088103 | EMBL:AY093227 | EMBL:BT003397 | ProteinID:CAB38608.1 | ProteinID:CAB80537.1 |
| InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0001932 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006457 | GO:GO:0006464 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009416 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009626 |
| GO:GO:0009628 | GO:GO:0009704 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009742 | GO:GO:0009785 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016853 | GO:GO:0019538 | GO:GO:0046686 |
| GO:GO:0048046 | InterPro:IPR002130 | InterPro:IPR029000 | EMBL:L14844 | RefSeq:NP_195585.1 | ProteinID:OAO99957.1 |
| UniProt:P34790 | PFAM:PF00160 | PIRSF:PIRSF001467 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 |
| PANTHER:PTHR11071 | PANTHER:PTHR11071:SF382 | Symbol:ROC1 | SUPFAM:SSF50891 | UniParc:UPI000000117C | SEG:seg |
Description
CYP18-3Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V2S8]
Coordinates
chr4:-:18083395..18084630
Molecular Weight (calculated)
18373.9 Da
IEP (calculated)
7.965
GRAVY (calculated)
-0.271
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPKVYFDM TIDGQPAGRI VMELYTDKTP RTAENFRALC TGEKGVGGTG KPLHFKGSKF HRVIPNFMCQ GGDFTAGNGT GGESIYGSKF EDENFERKHT
101: GPGILSMANA GANTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSSSGKPT KPVVVADCGQ LS
101: GPGILSMANA GANTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSSSGKPT KPVVVADCGQ LS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.