CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51416	Soybean	cytosol	98.84	98.84
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	91.86	91.86
KRH29120	Soybean	endoplasmic reticulum, nucleus	91.28	91.28
AT4G38740.1	Thale cress	cytosol	89.53	89.53
VIT_18s0001g14400.t01	Wine grape	extracellular	88.95	88.95
CDX90292	Canola	cytosol	87.79	87.79
CDY12100	Canola	cytosol	87.79	87.79
Bra010728.1-P	Field mustard	cytosol	87.79	87.79
PGSC0003DMT400004125	Potato	extracellular	86.63	87.13
Solyc10g054910.1.1	Tomato	extracellular, unclear	86.63	86.63
PGSC0003DMT400011344	Potato	cytosol	86.63	86.63
Solyc01g111170.2.1	Tomato	extracellular, nucleus	86.05	86.55
CDX72741	Canola	cytosol	86.05	86.05
CDY22414	Canola	cytosol, extracellular	85.47	85.47
Bra033574.1-P	Field mustard	cytosol	85.47	85.47
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	73.84	84.11
Zm00001d050635_P001	Maize	plastid	83.14	83.63
AT2G21130.1	Thale cress	cytosol	84.3	83.33
Zm00001d016661_P001	Maize	plastid	82.56	82.56
Zm00001d016660_P001	Maize	cytosol	82.56	82.56
EES04388	Sorghum	cytosol	81.98	82.46
TraesCS6D01G066700.1	Wheat	golgi, plastid	81.98	82.46
TraesCS6B01G093100.2	Wheat	cytosol	81.98	82.46
TraesCS6A01G068900.1	Wheat	cytosol	81.98	82.46
EES05164	Sorghum	cytosol	81.98	81.98
Os02t0121300-01	Rice	extracellular	81.98	81.98
KRG97056	Soybean	cytosol	77.33	76.0
KRH68802	Soybean	cytosol	76.16	74.86
TraesCS6A01G405900.1	Wheat	cytosol	72.67	74.85
HORVU6Hr1G012570.2	Barley	cytosol	83.14	69.42
HORVU6Hr1G092950.1	Barley	endoplasmic reticulum, golgi	73.26	66.67
KRG98290	Soybean	endoplasmic reticulum	71.51	60.29
KRH30309	Soybean	endoplasmic reticulum	71.51	60.29
TraesCS6B01G450300.1	Wheat	cytosol	71.51	56.16
KRH13330	Soybean	endoplasmic reticulum, nucleus	57.56	54.7
KRH20677	Soybean	cytosol	56.4	53.01
TraesCS6B01G450400.1	Wheat	cytosol	66.86	52.51
KRH31143	Soybean	endoplasmic reticulum	72.09	52.1
KRH37809	Soybean	nucleus	58.14	51.55
KRG97736	Soybean	endoplasmic reticulum	70.35	51.49
TraesCS6A01G405800.1	Wheat	cytosol	73.26	51.01
KRG93128	Soybean	nucleus, plastid	63.95	43.48
KRH36359	Soybean	nucleus, plastid	63.37	43.43
KRH60706	Soybean	endoplasmic reticulum	56.98	42.24
KRH29272	Soybean	endoplasmic reticulum	55.81	40.68
KRH24294	Soybean	endoplasmic reticulum	55.81	40.68
KRH33684	Soybean	nucleus, plastid	61.05	39.92
KRG96627	Soybean	nucleus, plastid	59.88	39.62
KRH68358	Soybean	plastid	50.0	36.44
KRH04660	Soybean	cytosol, nucleus	60.47	28.89
KRH50243	Soybean	cytosol	59.3	28.25
KRH57738	Soybean	cytosol, nucleus	58.72	28.06
KRH71172	Soybean	cytosol	58.14	27.7
KRH67275	Soybean	nucleus	66.86	17.22
KRG95597	Soybean	nucleus	65.7	17.15
KRH15996	Soybean	nucleus	53.49	10.84
KRH61803	Soybean	nucleus	51.74	10.56
KRH52477	Soybean	nucleus	51.16	10.35

Protein Annotations

EntrezGene:100787030	MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:A0A0R0KBI3	EMBL:ACUP02002137	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_04G005300	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlants:KRH60719
ProteinID:KRH60719	ProteinID:KRH60719.1	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF382	SUPFAM:SSF50891	UniParc:UPI000189D78D	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:439283..440057

Molecular Weight (calculated)

18198.7 Da

IEP (calculated)

8.476

GRAVY (calculated)

-0.252

Length

172 amino acids

Sequence
(BLAST)

001: MANPKVYFDM TIGGQPAGRI VMELYADTTP RTAENFRALC TGEKGVGRSG KPLHYKGSTF HRVIPNFMCQ GGDFTAGNGT GGESIYGSKF ADENFIKKHT
101: GPGILSMANA GPGTNGSQFF ICTVKTEWLD GKHVVFGQVV EGLDVVKDIE KVGSSSGKTS KPVVVADSGQ LS

Best Arabidopsis Sequence Match ( AT2G16600.1 )
(BLAST)

001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS

Arabidopsis Description

CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.